News:
On October 31, we will start at 11:00.
The course starts October 17 with a first organizational meeting.
General Information
Lecturers: Heike Siebert, Melania Nowicka
Topics: systems biology, boolean modeling, synthetic biology
Requirements
During the course several smaller group projects need to be conducted and presented to obtain "active participation". The final grade will be given for the project presentation on a case study in modeling and analyzing molecular networks.
Time plan
| Date | Topic |
|---|---|
| 17.10. | Organization and info |
| 24.10. | Intro systems biology modeling, SBML, BioModels |
| 31.10. | Network structure |
| 07.11. | Software Tutorial I (Cytoscape) |
| 14.11. | BNW I, sea urchin model |
| 21.11. | Software Tutorial II (BoolNet), BNW II |
| 28.11. | Sofware Tutorial III (GinSim), BNW III |
| 05.12. | Case studies/project |
| 12.12. | Short presentations, project |
| 19.12. | Introduction to synthetic biology |
| 09.01. | Synthetic circuit design (Cello) |
| 16.01. | Designing cell classifiers |
| 23.01. | Applications in SynBio, summary |
| 30.01. | Project |
| 06.02. | Final project presentations |
| 13.02. | Feedback |