Course details

Faculty

Department

Semester

LV prefix

194

Type

Name

SAP Name

English name

Capacity

Infinite

CM Registration Procedure

SWS

Course language

Attendance

Compulsory

Responsible lecturer

Executive lecturers

Secretaries

Lectureship

Comments for internal planning

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German
English

Description

Ziel der LV:

Die Studentinnen und Studenten haben ein tieferes Verständnis für grundlegende algorithmische Konzepte im Bereich der Analyse genomischer Sequenzen vor dem Hintergrund aktueller Forschungsrichtungen der Bioinformatik und Biotechnologie. Sie verstehen verschiedene Paradigmen zur approximativen Suche, sie wissen, unter welchen Voraussetzungen bestimmte Algorithmen anderen vorzuziehen sind, und können wissenschaftliche Publikationen auf dem Gebiet entsprechend einschätzen.

Es werden vertieft Themen aus beispielsweise folgenden Gebieten behandelt:
- Paradigmen für approximative, semiglobale Alignments (read mapping)
- Methoden zur Genomassemblierung und Metagenomassemblierung
- Methoden zum Bestimmen genetischer Variationen (SNVs, SNPs, CNVs) - Algorithmische Probleme bei der Quantifizierung mit Hilfe von NGS Daten

Alle weiteren Informationen im KVV: https://kvv.imp.fu-berlin.de/portal/

Additional information

Description

Goals:

The students will gain a deeper unterstanding for basic algorithmic concepts for the analysis of genomic sequencing related to state of the art research in bioinformatics and biotechnology. They will learn various paradigms for the approximate search. They will know which algorithms should be preferred under what circumstances and are able to grasp key concepts of scientific publications related to this field.

Some examples of subjects that will be more deeply discussed:
- Paradigms for approximative, semiglobal alignments (read mapping)
- Methods for genomic assembly and metagenomic assembly
- Methods for the identification of genetic variants (SNVs, SNPs, CNVs) - algorithmic problems of quantifying expession using NGS data

Find more information on: https://kvv.imp.fu-berlin.de/portal/

Additional information

Cross-language

References

LV-Number & Type

194 016

Name

SAP Name

English name

Capacity

Infinite

CM Registration Procedure

SWS

Attendance

Compulsory

Responsible lecturer

Executive lecturers

Lectureship

Description

LV-Number & Type

194 016

Name

SAP Name

English name

Capacity

Infinite

CM Registration Procedure

SWS

Attendance

Compulsory

Responsible lecturer

Executive lecturers

Lectureship

Description

Modules

Submodules for Sequenzanalyse

Submodules for Übung zu Sequenzanalyse

Submodules for Seminar zu Sequenzanalyse

Studies

Cross-language

Expectant Mother

Nursing Mother

AncillaryCourses

Expectant Mother

Nursing Mother

Expectant Mother

Nursing Mother