Evento

Bachelor's programme in Bioinformatics

Bachelor's programme in Bioinformatics (2012 study regulations) (0260c_k150)

Module: Informatik A (0260cA1.1)

Computer Science A

LV: 19305601

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4 SWS

Klaus Kriegel

Lecture

Submod: 0260cA1.1.1

Akt: 15.09.2020 13:16

Wed, 08:00 - 10:00 (T9/Gr. Hörsaal)

Fri, 08:00 - 10:00 (T9/Gr. Hörsaal)

Description

Contents: We begin with the notion of an algorithm, and we describe the cycle from problem statement to algorithmic solution to working code. We consider numerous examples that illustrate fundamental principles of algorithm design. In order to implement our algorithms, we introduce the functional programming language Haskell. Additionally, we explore the theoretical, technological, and organizational principles of computer systems. Topics covered include the binary representation of information in a computer, Boolean functions and their implementation as circuits, the design principles of CPUs, and the von-Neumann-architecture.

Prerequisites: We recommend that participants of this class attend the Brückenkurs Mathematical Foundations of Computer Science and Bioinformatics.

References

S. Thompson; Haskell: The Craft of Functional Programming; Addison-Wesley
F. Rabhi, G. Lapalme; Algorithms: A Functional Proramming Approach; Addison-Wesley
G. Hutton; Programming in Haskell; Cambridge University Press
A. Tanenbaum, J. Goodman; Computerarchitektur; Pearson Studium

Additional appointments

Klausur

HFB/A Hörsaal

HFB/B Hörsaal

Klaus Kriegel

14.02.2020 08:00 - 10:00

Nachklausur

Gr. Hörsaal (Raum B.001)

Klaus Kriegel

06.04.2020 10:00 - 12:00

Nachklausur

T9/SR 005 Übungsraum

Klaus Kriegel

02.10.2020 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Klaus Kriegel

wöchentlich, ab 16.10.2019, 08:00 - 10:00 (16 Termine)

T9/Gr. Hörsaal

Klaus Kriegel

wöchentlich, ab 18.10.2019, 08:00 - 10:00 (15 Termine)

Practice seminar for Computer Science A

LV: 19305602

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2 SWS

Klaus Kriegel

Practice seminar

Submod: 0260cA1.1.2

Akt: 10.10.2019 16:00

Fri, 10:00 - 12:00 (T9/055 Seminarraum)

Fri, 10:00 - 12:00 (A6/SR 031 Seminarraum)

Thu, 08:00 - 10:00 (T9/051 Seminarraum)

Wed, 14:00 - 16:00 (A3/SR 210 Seminarraum)

Thu, 10:00 - 12:00 (T9/055 Seminarraum)

Thu, 08:00 - 10:00 (T9/055 Seminarraum)

Additional appointments

Appointment series

T9/055 Seminarraum

Klaus Kriegel

wöchentlich, ab 18.10.2019, 10:00 - 12:00 (16 Termine)

A6/SR 031 Seminarraum

Klaus Kriegel

wöchentlich, ab 25.10.2019, 10:00 - 12:00 (15 Termine)

T9/051 Seminarraum

Klaus Kriegel

wöchentlich, ab 17.10.2019, 08:00 - 10:00 (16 Termine)

A3/SR 210 Seminarraum

Klaus Kriegel

wöchentlich, ab 23.10.2019, 14:00 - 16:00 (15 Termine)

T9/055 Seminarraum

Klaus Kriegel

wöchentlich, ab 17.10.2019, 10:00 - 12:00 (16 Termine)

T9/055 Seminarraum

Klaus Kriegel

wöchentlich, ab 17.10.2019, 08:00 - 10:00 (16 Termine)

Module: Algorithms and Data Structures (0260cA1.3)

AlDaBi

LV: 19400001

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2 SWS

Knut Reinert

Lecture

Submod: 0260cA1.3.1

Akt: 04.08.2020 14:00

Thu, 14:00 - 16:00 (Hs B (Raum B.004, 100 Pl.))

Description

This lecture deals with: Exact and approximative string matching, dynamic programming and scoring schemata, finite automata and formal languages, pairwise und multiple alignment, multiple string matching, basics of Markov Chains und Hidden Markov Models, algorithms for fast search in sequence data bases.

In the exercises the above topics will be deepened, and techniques of analysis and evidence will be practised.

There is an associated practical course "Algorithmen und Datenstrukturen" (19401330). Please check there for further information!

References

Generelle Bücher/Basic reading:

Neil C. Jones, Pavel A. Pevzner: An Introduction to Bioinformatics Algorithms. MIT Press, Cambridge, MA, 2004. ISBN 0-262-10106-8
R. Durbin, S. Eddy, A. Krogh, G. Mitchison: Biological sequence analysis. Cambridge University Press, 1998. ISBN 0-521-62971-3
David B. Mount: Bioinformatics. Sequence and Genome Analysis. Cold Spring Harbor Laboratory Press, New York, 2001. ISBN 0-87969-608-7
Chao, Zhang: Sequence comparison, Theory and Methods: Springer, ISBN: 978-1-85800-319-4

Additional appointments

Review

A3/Hs 001 Hörsaal

Knut Reinert

06.12.2019 16:00 - 18:00

Nachklausur

A3/Hs 001 Hörsaal

Knut Reinert

30.09.2020 10:00 - 12:00

Appointment series

Hs B (Raum B.004, 100 Pl.)

Knut Reinert

einmal, ab 17.10.2019, 14:00 - 16:00 (15 Termine)

Practice seminar for AlDaBi

LV: 19400002

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2 SWS

Knut Reinert

Practice seminar

Submod: 0260cA1.3.2

Akt: 27.08.2019 13:00

Tue, 12:00 - 14:00 (A3/ 024 Seminarraum )

Tue, 08:00 - 10:00 (T9/046 Seminarraum)

Thu, 12:00 - 14:00 (T9/049 Seminarraum)

Wed, 12:00 - 14:00 (T9/046 Seminarraum)

Additional appointments

Appointment series

A3/ 024 Seminarraum

Knut Reinert

einmal, ab 15.10.2019, 12:00 - 14:00 (16 Termine)

T9/046 Seminarraum

Knut Reinert

einmal, ab 15.10.2019, 08:00 - 10:00 (16 Termine)

T9/049 Seminarraum

Knut Reinert

einmal, ab 17.10.2019, 12:00 - 14:00 (16 Termine)

T9/046 Seminarraum

Knut Reinert

einmal, ab 16.10.2019, 12:00 - 14:00 (16 Termine)

Module: Algorithmic Bioinformatics (0260cA1.5)

Algorithmic Bioinformatics

LV: 19401201

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4 SWS

Martin Vingron

Birte Katharina Kehr

Lecture

Submod: 0260cA1.5.1

Akt: 05.03.2020 16:00

Mon, 12:00 - 14:00 (Hs B (Raum B.004, 100 Pl.))

Wed, 10:00 - 12:00 (Hs A (Raum B.006, 200 Pl.))

Description

Please see German description.

Additional appointments

Nachklausur

A3/Hs 001 Hörsaal

Martin Vingron

Birte Katharina Kehr

06.04.2020 10:00 - 13:00

Appointment series

Hs B (Raum B.004, 100 Pl.)

Martin Vingron

Birte Katharina Kehr

einmal, ab 14.10.2019, 12:00 - 14:00 (15 Termine)

Hs A (Raum B.006, 200 Pl.)

Martin Vingron

Birte Katharina Kehr

einmal, ab 16.10.2019, 10:00 - 12:00 (16 Termine)

Practice seminar for Algorithmic Bioinformatics

LV: 19401202

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2 SWS

Alena van Bömmel

Martin Vingron

Practice seminar

Submod: 0260cA1.5.2

Akt: 05.06.2020 16:00

Tue, 16:00 - 18:00 (T9/053 Seminarraum)

Tue, 14:00 - 16:00 (0.1.01 Hörsaal B)

Tue, 10:00 - 12:00 (0.1.01 Hörsaal B)

Tue, 12:00 - 14:00 (A3/019 Seminarraum)

Additional appointments

Appointment series

T9/053 Seminarraum

Alena van Bömmel

Martin Vingron

einmal, ab 15.10.2019, 16:00 - 18:00 (16 Termine)

0.1.01 Hörsaal B

Alena van Bömmel

Martin Vingron

einmal, ab 15.10.2019, 14:00 - 16:00 (16 Termine)

0.1.01 Hörsaal B

Alena van Bömmel

Martin Vingron

einmal, ab 15.10.2019, 10:00 - 12:00 (16 Termine)

A3/019 Seminarraum

Alena van Bömmel

Martin Vingron

einmal, ab 15.10.2019, 12:00 - 14:00 (16 Termine)

Internship for Algorithmic Bioinformatics

LV: 19401230

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2 SWS

No lecturers

Internship

Submod: 0260cA1.5.3

Akt: 16.01.2020 12:00

Module: Algorithm and Data Structures Practical (0260cA1.6)

P: Algorithms and Data Structures

LV: 19401330

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4 SWS

Chris Bielow

Internship

Submod: 0260cA1.6.1

Akt: 09.10.2019 10:00

Mon, 10:00 - 12:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Mon, 14:00 - 16:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Mon, 12:00 - 14:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Tue, 08:00 - 10:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Mon, 14:00 - 16:00 (T9/Gr. Hörsaal)

Description

This practical course is associated with the lecture and exercise "Algorithmen und Datenstrukturen". It starts with an introduction to programming tools and the programming language applied in the lecture/exercise. After that, programming skills will be explained and taught using the algorithms discussed in the lecture.

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Chris Bielow

einmal, ab 21.10.2019, 10:00 - 12:00 (8 Termine)

A6/017 Frontalunterrichtsraum (Bioinf)

Chris Bielow

einmal, ab 21.10.2019, 14:00 - 16:00 (8 Termine)

A6/017 Frontalunterrichtsraum (Bioinf)

Chris Bielow

einmal, ab 21.10.2019, 12:00 - 14:00 (8 Termine)

A6/017 Frontalunterrichtsraum (Bioinf)

Chris Bielow

einmal, ab 22.10.2019, 08:00 - 10:00 (8 Termine)

T9/Gr. Hörsaal

Chris Bielow

einmal, ab 14.10.2019, 14:00 - 16:00 (8 Termine)

Module: Mathematik für Bioinformatiker I (0260cA2.1)

Mathematics for Bioinformaticians I

LV: 19400201

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4 SWS

Knut Reinert

Markus Arthur Köbis

Lecture

Submod: 0260cA2.1.1

Akt: 04.08.2020 14:00

Tue, 14:00 - 16:00 (A3/Hs 001 Hörsaal)

Fri, 12:00 - 14:00 (A3/Hs 001 Hörsaal)

Description

See German text.

Additional appointments

Klausur

T9/Gr. Hörsaal

Knut Reinert

Markus Arthur Köbis

21.02.2020 12:00 - 14:00

Nachklausur

T9/Gr. Hörsaal

Knut Reinert

Markus Arthur Köbis

12.03.2020 12:00 - 14:00

Nachklausur

Hs 1a Hörsaal

Knut Reinert

Markus Arthur Köbis

29.09.2020 10:00 - 12:00

Appointment series

A3/Hs 001 Hörsaal

Knut Reinert

Markus Arthur Köbis

einmal, ab 15.10.2019, 14:00 - 16:00 (16 Termine)

A3/Hs 001 Hörsaal

Knut Reinert

Markus Arthur Köbis

einmal, ab 18.10.2019, 12:00 - 14:00 (16 Termine)

Practice seminar for Mathematics for Bioinformaticians I

LV: 19400202

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2 SWS

Knut Reinert

Markus Arthur Köbis

Practice seminar

Submod: 0260cA2.1.2

Akt: 27.09.2019 16:00

Wed, 12:00 - 14:00 (T9/049 Seminarraum)

Thu, 08:00 - 10:00 (T9/046 Seminarraum)

Tue, 16:00 - 18:00 (T9/049 Seminarraum)

Additional appointments

Appointment series

T9/049 Seminarraum

Knut Reinert

Markus Arthur Köbis

einmal, ab 16.10.2019, 12:00 - 14:00 (16 Termine)

T9/046 Seminarraum

Knut Reinert

Markus Arthur Köbis

einmal, ab 17.10.2019, 08:00 - 10:00 (16 Termine)

T9/049 Seminarraum

Knut Reinert

Markus Arthur Köbis

einmal, ab 15.10.2019, 16:00 - 18:00 (16 Termine)

Module: Computerorientierte Mathematik I (0260cA2.3)

Computerorientated Mathematics I (5 LP)

LV: 19200501

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2 SWS

Carsten Gräser

Lecture

Submod: 0260cA2.3.1

Akt: 19.02.2020 15:40

Fri, 12:00 - 14:00 (Gr. Hörsaal (Raum B.001))

Description

Contents:
Computers play an important role in (almost) all situations in life today. Computer-oriented mathematics provides basic knowledge in dealing with computers for solving mathematical problems and an introduction to algorithmic thinking. At the same time, typical mathematical software such as Matlab and Mathematica will be introduced. The motivation for the questions under consideration is provided by simple application examples from the aforementioned areas. The content of the first part includes fundamental terms of numerical calculation: number representation and rounding errors, condition, efficiency and stability.

Homepage: All current information on lectures and lectures

References

Literatur: R. Kornhuber, C. Schuette, A. Fest: Mit Zahlen Rechnen (Skript zur Vorlesung)

Additional appointments

Nachklausur

HFB/A Hörsaal

Carsten Gräser

01.04.2020 10:00 - 12:00

Appointment series

Gr. Hörsaal (Raum B.001)

Carsten Gräser

wöchentlich, ab 18.10.2019, 12:00 - 14:00 (15 Termine)

Practice seminar for Computerorientated Mathematics I (5 LP)

LV: 19200502

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2 SWS

Carsten Gräser

Lasse Hinrichsen-Bischoff

Practice seminar

Submod: 0260cA2.3.2

Akt: 07.10.2019 16:00

Thu, 16:00 - 18:00 (A3/ 024 Seminarraum )

Mon, 14:00 - 16:00 (A3/ 024 Seminarraum )

Tue, 12:00 - 14:00 (A6/SR 025/026 Seminarraum)

Fri, 14:00 - 16:00 (T9/049 Seminarraum)

Wed, 16:00 - 18:00 (A3/ 024 Seminarraum )

Mon, 10:00 - 12:00 (A3/019 Seminarraum)

Mon, 16:00 - 18:00 (A3/019 Seminarraum)

Fri, 08:00 - 10:00 (A3/019 Seminarraum)

Additional appointments

Appointment series

A3/ 024 Seminarraum

Carsten Gräser

Lasse Hinrichsen-Bischoff

wöchentlich, ab 17.10.2019, 16:00 - 18:00 (16 Termine)

A3/ 024 Seminarraum

Carsten Gräser

Lasse Hinrichsen-Bischoff

wöchentlich, ab 14.10.2019, 14:00 - 16:00 (16 Termine)

A6/SR 025/026 Seminarraum

Carsten Gräser

Lasse Hinrichsen-Bischoff

wöchentlich, ab 15.10.2019, 12:00 - 14:00 (16 Termine)

T9/049 Seminarraum

Carsten Gräser

Lasse Hinrichsen-Bischoff

wöchentlich, ab 18.10.2019, 14:00 - 16:00 (16 Termine)

A3/ 024 Seminarraum

Carsten Gräser

Lasse Hinrichsen-Bischoff

wöchentlich, ab 16.10.2019, 16:00 - 18:00 (16 Termine)

A3/019 Seminarraum

Carsten Gräser

Lasse Hinrichsen-Bischoff

wöchentlich, ab 14.10.2019, 10:00 - 12:00 (16 Termine)

A3/019 Seminarraum

Carsten Gräser

Lasse Hinrichsen-Bischoff

wöchentlich, ab 14.10.2019, 16:00 - 18:00 (16 Termine)

A3/019 Seminarraum

Carsten Gräser

Lasse Hinrichsen-Bischoff

wöchentlich, ab 18.10.2019, 08:00 - 10:00 (16 Termine)

Module: Statistics for Biosciences I (0260cA2.5)

Statistics I for biosciences

LV: 60100001

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2 SWS

Jochen Kruppa

Lecture

Submod: 0260cA2.5.1

Akt: 18.10.2019 18:00

Mon, 16:00 - 18:00 (Hs A (Raum B.006, 200 Pl.)A6/SR 031 Seminarraum)

Practice seminar for Statistics I for biosciences

LV: 60100002

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2 SWS

Jochen Kruppa

Practice seminar

Submod: 0260cA2.5.2

Akt: 15.10.2019 12:00

Tue, 10:00 - 12:00 (T9/055 Seminarraum)

Wed, 08:00 - 10:00 (T9/049 Seminarraum)

Tue, 16:00 - 18:00 (T9/055 Seminarraum)

Additional appointments

Appointment series

T9/055 Seminarraum

Jochen Kruppa

einmal, ab 15.10.2019, 10:00 - 12:00 (16 Termine)

T9/049 Seminarraum

Jochen Kruppa

einmal, ab 16.10.2019, 08:00 - 10:00 (16 Termine)

T9/055 Seminarraum

Jochen Kruppa

einmal, ab 15.10.2019, 16:00 - 18:00 (16 Termine)

Module: General Biology (0260cA3.2)

V Allgemeine Biologie für Bioinformatik - Teil Botanik

LV: 23770a

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2 SWS

Margarete Baier

Lecture

Submod: 0260cA3.2.1

Akt: 23.03.2020 14:00

Tue, 12:00 - 14:00 (Elisabeth-Schiemann-Hörsaal (R 014))

Thu, 12:00 - 14:00 (Elisabeth-Schiemann-Hörsaal (R 014))

Description

I. Einführung
II. Was ist eine Pflanze?
III. Besondere Organelle und Strukturen der Pflanzenzelle
IV. Das Pflanzenreich
V. Gewebe, Organe und Baupläne der Höheren Pflanzen
VI. Regulation von Pflanzenfunktionen durch innere Signale
VII. Umweltabhängigkeit von Pflanzen
VIII. Zusammenfassung und Vorstellen der Klausurmodalitäten

Additional appointments

Appointment series

Elisabeth-Schiemann-Hörsaal (R 014)

Margarete Baier

wöchentlich, ab 15.10.2019, 12:00 - 14:00 (6 Termine)

Elisabeth-Schiemann-Hörsaal (R 014)

Margarete Baier

wöchentlich, ab 17.10.2019, 12:00 - 14:00 (6 Termine)

V Allgemeine Biologie für Bioinformatik - Teil Zoologie

LV: 23770b

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2 SWS

Ursula Koch

Dirk Johannes Mikolajewski

Peter Robin Hiesinger

Mathias Wernet

Gerit Linneweber

Lecture

Submod: 0260cA3.2.2

Akt: 23.03.2020 14:00

Thu, 12:00 - 14:00 (Elisabeth-Schiemann-Hörsaal (R 014))

Tue, 12:00 - 14:00 (Elisabeth-Schiemann-Hörsaal (R 014))

Description

Beginn Teil Zoologie: 28.11.2019 Beginn Teil Tierphysiologie: 14.01.2020

References

Sadava, Hillis, Heller, Berenbaum: Purves Biologie

Additional appointments

Appointment series

Elisabeth-Schiemann-Hörsaal (R 014)

Ursula Koch

Dirk Johannes Mikolajewski

Peter Robin Hiesinger

Mathias Wernet

Gerit Linneweber

wöchentlich, ab 28.11.2019, 12:00 - 14:00 (7 Termine)

Elisabeth-Schiemann-Hörsaal (R 014)

Ursula Koch

Dirk Johannes Mikolajewski

Peter Robin Hiesinger

Mathias Wernet

Gerit Linneweber

wöchentlich, ab 03.12.2019, 12:00 - 14:00 (6 Termine)

Module: Molecular Biology and Biochemistry I (0260cA3.3)

Biochemie I - Grundlagen der Biochemie

LV: 21601a

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2 SWS

Markus Wahl

Florian Heyd

Helge Ewers

Lecture

Submod: 0260cA3.3.1

Akt: 13.10.2020 02:00

Wed, 12:00 - 14:00 (Hs Kristallographie)

Description

Qualifikationsziele:
Die Studentinnen und Studenten kennen die Entstehung und molekulare Struktur der wichtigsten zellulären Makromoleküle und Stoffklassen sowie ihren biologischen Kontext. Der Schwerpunkt liegt auf einem chemischen Grundverständnis des molekularen Aufbaus von Biomolekülen.

Inhalte:
Chemische und zellbiologische Grundlagen, Struktur von DNA und RNA, Replikation und Transkription, Proteinbiosynthese, Regulation der Genexpression, gentechnologische Methoden, Aminosäuren und Peptide, Proteinstruktur und Proteinfaltung, Proteom, posttranslationale Modifikationen, Methoden der Proteinforschung, Enzyme, Kohlenhydrate, Lipide und Biomembranen, Einführung in den Stoffwechsel und die Stoffwechselregulation.

Prof. Dr. H. Ewers: helge.ewers@fu-berlin.de
Prof. Dr. F. Heyd: florian.heyd@fu-berlin.de
Prof. Dr. M. Wahl: mwahl@zedat.fu-berlin.de

Additional information for students

entspricht Molekularbiologie und Biochemie I für Bioinformatiker.

Additional appointments

Vorbesprechung

Hs Kristallographie

Markus Wahl

Florian Heyd

Helge Ewers

15.10.2019 12:00 - 14:00

Klausur: 21601 - Biochemie I - Grundlagen der Biochemie

Hs A (Raum B.006, 200 Pl.)

Markus Wahl

Florian Heyd

Helge Ewers

25.02.2020 10:00 - 12:00

Nachklausur: 21601 - Biochemie I - Grundlagen der Biochemie

Hs B (Raum B.004, 100 Pl.)

Markus Wahl

Florian Heyd

Helge Ewers

30.03.2020 10:00 - 12:00

Appointment series

Hs Kristallographie

Markus Wahl

Florian Heyd

Helge Ewers

wöchentlich, ab 16.10.2019, 12:00 - 14:00 (16 Termine)

Übungen zur Biochemie I - Grundlagen der Biochemie

LV: 21601b

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2 SWS

Markus Wahl

Florian Heyd

Helge Ewers

Practice seminar

Submod: 0260cA3.3.2

Akt: 06.11.2019 16:00

Wed, 10:00 - 12:00 (SR 33.03 SR 34.16/17)

Wed, 08:00 - 10:00 ()

Tue, 12:00 - 14:00 (SR 25.20 SR 34.16/17Hs Kristallographie)

Description

Qualifikationsziele: Die Studentinnen und Studenten kennen die Entstehung und molekulare Struktur der wichtigsten zellulären Makromoleküle und Stoffklassen sowie ihren biologischen Kontext. Der Schwerpunkt liegt auf einem chemischen Grundverständnis des molekularen Aufbaus von Biomolekülen. Inhalte: Chemische und zellbiologische Grundlagen, Struktur von DNA und RNA, Replikation und Transkription, Proteinbiosynthese, Regulation der Genexpression, gentechnologische Methoden, Aminosäuren und Peptide, Proteinstruktur und Proteinfaltung, Proteom, posttranslationale Modifikationen, Methoden der Proteinforschung, Enzyme, Kohlenhydrate, Lipide und Biomembranen, Einführung in den Stoffwechsel und die Stoffwechselregulation. Prof. Dr. H. Ewers: helge.ewers@fu-berlin.de Prof. Dr. F. Heyd: florian.heyd@fu-berlin.de Prof. Dr. M. Wahl: mwahl@zedat.fu-berlin.de

Additional information

Die Übungen finden n.V. in kleineren Gruppen i.d.R. dienstags von 12:00 - 14:00 Uhr bzw. mittwochs von 10:00 - 12:00 Uhr Uhr statt. Die Verteilung findet im Rahmen der Vorbesprechung (s. 21601a) statt.

Additional appointments

Appointment series

SR 33.03

SR 34.16/17

Markus Wahl

Florian Heyd

Helge Ewers

wöchentlich, ab 23.10.2019, 10:00 - 12:00 (15 Termine)

Markus Wahl

Florian Heyd

Helge Ewers

wöchentlich, ab 23.10.2019, 08:00 - 10:00 (15 Termine)

SR 25.20

SR 34.16/17

Hs Kristallographie

Markus Wahl

Florian Heyd

Helge Ewers

wöchentlich, ab 22.10.2019, 12:00 - 14:00 (15 Termine)

Module: Molecular Biology and Biochemistry II (0260cA3.4)

Molekularbiologie und Biochemie II

LV: 21698a

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SWS

Sigmar Stricker

Lecture

Submod: 0260cA3.4.1

Akt: 20.02.2020 14:13

Thu, 10:00 - 12:00 (Hörsaal/Thielallee 67)

Description

Vorlesung für Studierende der Bioinformatik

Additional information for students

Qualifikationsziele: Die Studentinnen und Studenten haben ein Grundlagenverständnis in folgenden Bereichen: Zusammenwirken anatomischer, zellbiologischer und biochemische Prinzipien der Genexpression und des Energiestoffwechsels in Säugetieren, Regulation der Genexpression auf den Ebenen von Chromatinstruktur, Transkription, Prozessierung und Modifizierung in Säugetieren, Zell-Morphologie, -Mobilität und -Adhäsion in Organstrukturen von Säugetieren. Inhalte: Strukturprinzipien in Nuckleinsäuren und Proteinen, Chaperone und Ausbildung biologisch korrekter Protein Strukturen, Prinzipien der Struktur-Vorhersage, Genom-Komponenten und quantitative Zusammensetzung, Remodellierung von Chromatin zu transkribierbaren und nicht-transkribierbaren Konformationen, epigenetischer Histon-Code, CG-Inseln und DNA-Methylierung, modularer Aufbau der Promotoren, Protein: DNA-Wechelwirkungen und deren Strukturdomänen bei der qualitativen und quantitativen Steuerung der Transkription, snRNP und RNA-Prozessierung, Selbstspleißende Introns, RNA-Editierung, Kern-Cytoplasma, Cyotoplasma-Kern Transport, anatomische, zellbiologische und biochemische Prinzipien zur Gewinnung chemischer Reaktionsernergie, Protein-Abbau und Autophagie, Cytoskelett, Zell-Motilität und Zelladhäsion.

Additional appointments

Nachklausur 21698 Molekularbiologie und Biochemie II

Hörsaal/Thielallee 67

Sigmar Stricker

02.04.2020 10:00 - 12:00

Appointment series

Hörsaal/Thielallee 67

Sigmar Stricker

wöchentlich, ab 17.10.2019, 10:00 - 12:00 (16 Termine)

Übungen zu Molekularbiologie und Biochemie II

LV: 21698b

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SWS

Sigmar Stricker

Practice seminar

Submod: 0260cA3.4.2

Akt: 17.10.2019 16:00

Wed, 10:00 - 12:00 (Hörsaal/Thielallee 67)

Module: Genetik und Genomforschung (0260cA3.6)

V Genetik und Genomforschung (V)

LV: 23771a

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2 SWS

Michael Grünstäudl

Katja Nowick

Lecture

Submod: 0260cA3.6.1

Akt: 23.03.2020 14:00

Wed, 13:00 - 15:00 (Hs Zoologie (R 110))

Description

Ein Überblick über den Aufbau der Lehrveranstaltung (d.h. Vorlesung und Übung) wird im Rahmen der ersten Vorlesung gegeben.

Behandelte Themen (Teil Nowick):
1. Genregulation: Dogma der Molekularbiologie, Transkription, Translation, Transkriptionsfaktoren und deren Bindungsmotive
2. Nicht-kodierende RNAs: Strukturen, Funktionen
3. Genregulatorische Netzwerke: Komplexitaet der Genregulation, Analysemethoden
4. Alignments: paarweise Alignments, multiple Alignments
5. Populationsgenetik: Vererbungsmuster und Erbkrankheiten, Mutation, Selektion, Hardy-Weinberg-Gleichgewicht, Neutrale Theory, Molekulare Uhr, Linkage Disequilibrium, Tests fuer positive Selektion in Populationen
6. Phylogenetik: Baeume (rooted/unrooted), Neighbor joining, Maximum Parsimony, Maximum Likeliood, Tests fuer positive Selektion, Genomprojekte

Behandelte Themen (Teil Grünstäudl):
Vorlesung 1: Prinzipien der Evolution, Ähnlichkeit mit genetischen Algorithmen, Genomtypen einer Zelle (nukleäres, mitochondriales und chloroplastisches Genom)
Vorlesung 2: Aufbau und Struktur des nukleären Genoms, Aufbau und Struktur von Chromosomen, Modifikation von Histonen
Vorlesung 3: Funktion chromosomaler Strukturelemente (Replikationsursprung, Zentromer, Telomer), Steuerung des Zellzyklus
Vorlesung 4: Methoden der Chromosomenanalyse (Karyogramm, FISH, GISH), Chromosomenanomalien (Translokationen, Duplikationen, Deletionen)
Vorlesung 5: Aufbau und Struktur des mitochondrialen und des chloroplastischen Genoms, Unterschiede zum nukleären Genom
Vorlesung 6: Genfamilien und Prinzip der Homologie bei Genen, Prinzipien der Phylogenetik und Phylogenomik
Vorlesung 7: Arten der Genomsequenzierung, Next-Generation Sequencing (Illumina, PacBio), Genome Assembly, Genome Annotation

Additional information for students

Vorbesprechung am 1. Vorlesungstag (16.10.2019)

Additional appointments

Appointment series

Hs Zoologie (R 110)

Michael Grünstäudl

Katja Nowick

wöchentlich, ab 16.10.2019, 13:00 - 15:00 (16 Termine)

Ü Genetik und Genomforschung (Ü)

LV: 23771b

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1 SWS

No lecturers

Practice seminar

Submod: 0260cA3.6.2

Akt: 23.03.2020 14:00

Module: Neurobiology (0260cA3.8)

V Einführung in die Neurobiologie und Neuroinformatik für Bioinformatiker

LV: 23772a

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2 SWS

Silke Sachse

Ursula Koch

Peter Robin Hiesinger

Mathias Wernet

Lecture

Submod: 0260cA3.8.1

Akt: 23.03.2020 14:00

Thu, 12:15 - 13:45 (Hs Zoologie (R 110))

P Neurobiologie für Bioinformatiker Kurs A

LV: 23772b

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2 SWS

No lecturers

Internship

Submod: 0260cA3.8.2

Akt: 23.03.2020 14:00

P Neurobiologie für Bioinformatiker Kurs B

LV: 23772c

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2 SWS

No lecturers

Internship

Submod: 0260cA3.8.2

Akt: 23.03.2020 14:00

Module: General Chemistry (0260cA3.9)

Chemiepraktikum für Studierende der Bioinformatik

LV: 21791d

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3 SWS

Johann Spandl

Rainer Kickbusch

Internship / Seminar

Submod: 0260cA3.9.2

Akt: 13.10.2020 02:00

Mon, 09:00 - 18:00 (Hs Anorganik)

Tue, 11:00 - 13:00 (SR 34.16/17)

Additional information for students

Beginn: 02.03.20, Blockveranstaltung: 02.03.20 -13.03.20 (Weitere Infos: http://www.bcp.fu-berlin.de/chemie/chemie/forschung/InorgChem/agspandl/Lehrveranstaltungen/index.html )

Additional appointments

Test: 21791d - Chemiepraktikum für Studierende der Bioinformatik

N.N.

Johann Spandl

Rainer Kickbusch

18.03.2020 12:00 - 13:00

Appointment series

Hs Anorganik

Johann Spandl

Rainer Kickbusch

täglich, ab 02.03.2020, 09:00 - 18:00 (10 Termine)

SR 34.16/17

Johann Spandl

Rainer Kickbusch

täglich, ab 03.03.2020, 11:00 - 13:00 (9 Termine)

Master's programme in Bioinformatics

Master Bioinformatik (StO/PO 2007) (0262a_MA120)

Module: Vertiefung statistischer Methoden in Genetik und Bioinformatik (B) (0262aA2.10)

Open science, data handling and ethical aspects in bioinformatics

LV: 19404611

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2 SWS

Thilo Muth

Seminar

Submod: 0262aA2.10.1

Akt: 13.11.2019 16:00

Wed, 10:00 - 12:00 (A6/SR 032 Seminarraum)

Description

The main objectives of this seminar are (1) to introduce fundamental methods of data handling in bioinformatics research with a particular focus on lab management systems, containerized frameworks and software workflow systems, (2) to provide a general overview of open science, sustainable software development, information security and data protection and (3) to discuss ethical issues, chances and risks with regard to fundamental research and personalized medicine.

Planned topics are as follows:

Open vs. closed Science: chances and risks of open science. Open access and traditional publishing.
Sustainable software development and reproducible research: open data and open source, code repositories, maintainability of software and code in the sciences
Laboratory information management systems: sample management, integration of instruments and application, data exchange
Bioinformatic workflows: Galaxy, Snakemake and KNIME
Containerized frameworks: Advantages of using Docker, Bioconda etc.
Information security and data protection: securing personalized data, relevance for data analyses in research, efficient handling guidelines of data security, potential issues with open science
Ethical issues, chances and risks of omics research: immense opportunities when manipulating genome information, novel ethical questions need to be asked, „right not to know“, danger of discrimination against individuals or groups based on genetic differences

Organisational note: During the first course at the beginning of the semester, the aforementioned topics will be briefly introduced and course material (e.g. relevant publications) will be provided. In the second course, topics will be assigned to the attendees of the seminar.

Additional appointments

Appointment series

A6/SR 032 Seminarraum

Thilo Muth

einmal, ab 16.10.2019, 10:00 - 12:00 (16 Termine)

Master Bioinformatik (StO/PO 2012) (0262b_MA120)

Module: Numerics (0262bA1.3)

Numerics for Bioinformatics

LV: 19400601

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2 SWS

Max von Kleist

Lecture

Submod: 0262bA1.3.1

Akt: 08.07.2020 16:00

Mon, 14:00 - 16:00 (T9/055 Seminarraum)

Description

Content

Stochastic and differential equation modeling in systems biology
Numerical integrators (introduction to theory, strengths and weaknesses of different methods)
Stability- and Fixed Point Analysis
Parameter identification using maximum likelihood and Bayesian approaches

References

Literature

Stochastic Modelling for Systems Biology. Darren J. Wilkinson, CRC Press

Parameter Estimation and Inverse Problems Richard C. Aster, Elsevier

Additional information

Prerequisites

basic knowledge of Numerics

Additional appointments

Klausur

A6/SR 007/008 Seminarraum

Max von Kleist

27.07.2020 10:00 - 12:00

Appointment series

T9/055 Seminarraum

Max von Kleist

einmal, ab 14.10.2019, 14:00 - 16:00 (16 Termine)

Practice seminar for Numerics for Bioinformatics

LV: 19400602

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2 SWS

Max von Kleist

Practice seminar

Submod: 0262bA1.3.2

Akt: 30.10.2019 18:00

Mon, 16:00 - 18:00 (T9/055 Seminarraum)

Module: Research Lab (0262bA1.6)

Bioinformatics Research Internship

LV: 19400432

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0 SWS

No lecturers

Research Internship

Submod: 0262bA1.6.1

Akt: 13.07.2020 14:00

Module: Current Issues in Cell Physiology (0262bB2.1)

Current topics in cell physiology

LV: 60100613

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4 SWS

No lecturers

Lab Seminar

Submod: 0262bB2.1.1

Akt: 04.10.2019 12:00

Description

Block course during the semester break.

Location: Charité Campus Benjamin Franklin (Steglitz, Hindenburgdamm 30), Institut für Klinische Physiologie

For further information: http://klinphys.charite.de/bioinfo/

or mail to Dorothee Günzel

Within this course you will generate structural models of proteins by homology modelling. You will develop hypotheses which amino acids should be decisive for the structure. These Hypotheses will be tested by carrying out molecular biologic experiments (such as site-directed mutagenesis by using two-step PCR). The construct will be cloned into expression vectors, transformed and amplified in bacteria, extracted, sequenced and overexpressed in cultured cells.

These cells will be analyzed in the confocal laser scanning microscope and by other techniques. The results will be evaluated and interpreted in the context of the original hypitheses.

The experimental part will be flanked by seminars introducing the theoretical background and the various techniques.

The exact program of this course depends on the actual research of the institute and is tightly connected to our actual projects.

References

Milatz S, Piontek J, Hempel C, Meoli L, Grohe C, Fromm A, Lee IM, El-Athman R, Günzel D (2017) Tight junction strand formation by claudin-10 isoforms and claudin-10a/-10b chimeras. Ann. N.Y. Acad. Sci. 1405: 102-115 (https://www.ncbi.nlm.nih.gov/pubmed/28633196)

Piontek J, Winkler L, Wolburg H, Müller SL, Zuleger N, Piehl C, Wiesner B, Krause G, Blasig IE (2008) Formation of tight junction: determinants of homophilic interaction between classic claudins. FASEB J. 22: 146-158 (https://www.ncbi.nlm.nih.gov/pubmed/17761522)

Additional information

Please bring lab coat, if available!

Additional appointments

Appointment series

Module: Messung und Analyse physiologischer Prozesse (0262bB2.3)

Computer-aided drug design

LV: 60101813

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4 SWS

No lecturers

Lab Seminar

Submod: 0262bB2.3.1

Akt: 29.01.2020 08:00

Description

Practical Course: Using open source software and libraries for data analysis and computer-aided drug design

This practical course introduces the students to diverse software tools and libraries which can support data generation and analysis in various areas of computer-aided drug design. The course will sensitize the students to the ease and the profit of using bio-/cheminformatics methods.

The course shall enable the students to set-up their own drug design pipeline including protein target preparation, compound library set-up and filtering (i.e. using drug-like and toxicity filters), docking of the compounds to the target and evaluation of the results. The course will include the following tasks:

There will be a short introductory part into python programming using the novel and interactive IPython notebooks.
The students will write their own scripts using, e.g., python libraries for data handling (pandas), protein (BioPython) and compound (RDKit) processing as well as machine learning (scikit-learn) to prepare their compound libraries.
Open access tools for protein structure preparation and visual inspection (PyMol) will be used.
AutoDock software will be engaged for docking of the compounds into the target protein and the results will be evaluated.

Each day, we will perform a small task from the described computer-aided drug design pipeline (morning lecture followed by practical work asn presentation). The students can work individually or in groups, depending on the total number of participants.

Additional information

Practical course date: 21.02.-02.03.2019, 5 days course, 2 days for self-study in-between, 9 am - 5 pm.
Preliminary meeting: In January 2019, exact date will be announced soon.

Place: Campus Mitte, Virchowweg 6 (or surrounding Charité Campus), 10117 Berlin

Research AG Volkamer

Additional appointments

Appointment series

Module: Environmental Metagenomics (0262bB2.5)

S Umweltmetagenomik (S)

LV: 23780

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4 SWS

No lecturers

Lab Seminar

Submod: 0262bB2.5.1

Akt: 23.03.2020 14:00

Description

Contents:
Field sampling training, Field sampling, DNA extraction and genomic library preparation, Next-generation sequencing of DNA metabarcoding, bioinformatics data analysis, summarizing and presenting results.

References

Optional: Taberlet, Bonin, Zinger, Coissac. 2018. Environmental DNA for Biodiversity Research and Monitoring. Oxford University Press. https://git.metabarcoding.org/obitools/obitools/wikis/home

Additional information for students

This course starts on 5 August 2019. Interested students should contact Dr. Camila Mazzoni directly (mazzoni@izw-berlin.de)!

Additional appointments

Appointment series

Module: Current Issues in Structural Bioinformatics (0262bB2.7)

Current questions of structural Bioinformatics

LV: 60101113

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4 SWS

No lecturers

Lab Seminar

Submod: 0262bB2.7.1

Akt: 10.07.2020 14:00

Description

Welcome to the practical course, please look into the link for the theory module for the basic idea about the course.

The practical course gives the student a chance to test his or her understanding of the material taught in the theory course. A short introduction on each topic will be given on this course for individual topics. The students will be assigned to a small project/task which they have to perform. The students will be assigned into groups of two/three/max four members, depending on the total number of students registered for the course.

Structure of the course:

Everyday students will be assigned projects in groups for each topic. They work together to solve some interesting scientific problem. Each group will be closely supervised by the respective tutors. At the end of the lecture series, students (individual group) will be assigned one of the topic of the course, which they have to present in front of the wider audience. This will provide students, a way to practice presentation skills and can help them to develop the expertise needed to discuss their research in a clear and meaningful way.

Learning how to answer specific questions and present data to a range of individuals, will help students in other endeavors, including future conference presentations, masters or dissertation defenses.

Topic for practical lectures are:

Introductory session
Homology modeling
3D molecular superimposition of small molecules
In silico screening, molecular fingerprints and chemical similarity
Natural products and fragments based drug discovery
In silico toxicity prediction
Personalized medicine

Website: http://bioinf-apache.charite.de/main/course_practical.php

Important: Material from the theory course will be intensively used in the practical course. It is advisable, that the students need to attend the theory course before participating in the practical course. Both the courses are interlinked.

Additional information

Max.no of particpants: 12

Language of instruction: English

Practical course: 16.03. - 27.03.2020, 8 days during 2 weeks, daily 10 am - 5 pm

Website : http://bioinf-apache.charite.de/main/course_practical.php

Additional appointments

Appointment series

Module: Forschungsmodul A (0262bB3.1)

Metabolic Networks

LV: 19401801

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2 SWS

Alexander Bockmayr

Lecture

Submod: 0262bB3.1.1

Akt: 27.08.2019 13:00

Mon, 10:00 - 12:00 (T9/049 Seminarraum)

Description

The goal of this course is to give an introduction to the most important mathematical and algorithmic ideas underlying the constraint-based analysis of genome-scale metabolic networks, with applications to systems biology and biotechnology.

We will discuss the steady-state flux cone, flux balance analysis (FBA), flux variability analysis (FVA), flux coupling analysis (FCA), thermodynamic constraints, elementary flux modes (EFMs), and optimality principles for metabolic regulation. On the algorithmic side, the focus will be on linear and mixed-integer optimisation methods.

Additional appointments

Appointment series

T9/049 Seminarraum

Alexander Bockmayr

einmal, ab 14.10.2019, 10:00 - 12:00 (16 Termine)

Practice seminar for Metabolic Networks

LV: 19401802

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1 SWS

Alexander Bockmayr

Practice seminar

Submod: 0262bB3.1.3

Akt: 21.10.2019 10:00

Mon, 12:00 - 14:00 (T9/049 Seminarraum)

Journal Club Computational Biology

LV: 19402911

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 15.10.2019 18:00

Mon, 14:00 - 16:00 (T9/K 040 Multimediaraum)

Description

Content:

In this seminar we will present original work in Computational biology as well as progress reports from PhD students. Master students will either be assigend a paper, or present their MSc thesis plans and results, or report about their "Fortgeschrittenenpraktikum". Credits are only awarded for the presentation of papers.

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/K 040 Multimediaraum

Knut Reinert

einmal, ab 14.10.2019, 14:00 - 16:00 (16 Termine)

Open science, data handling and ethical aspects in bioinformatics

LV: 19404611

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2 SWS

Thilo Muth

Seminar

Submod: 0262aA2.10.1

Akt: 13.11.2019 16:00

Wed, 10:00 - 12:00 (A6/SR 032 Seminarraum)

Description

Planned topics are as follows:

Open vs. closed Science: chances and risks of open science. Open access and traditional publishing.
Sustainable software development and reproducible research: open data and open source, code repositories, maintainability of software and code in the sciences
Laboratory information management systems: sample management, integration of instruments and application, data exchange
Bioinformatic workflows: Galaxy, Snakemake and KNIME
Containerized frameworks: Advantages of using Docker, Bioconda etc.
Information security and data protection: securing personalized data, relevance for data analyses in research, efficient handling guidelines of data security, potential issues with open science
Ethical issues, chances and risks of omics research: immense opportunities when manipulating genome information, novel ethical questions need to be asked, „right not to know“, danger of discrimination against individuals or groups based on genetic differences

Additional appointments

Appointment series

A6/SR 032 Seminarraum

Thilo Muth

einmal, ab 16.10.2019, 10:00 - 12:00 (16 Termine)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221a

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2 SWS

No lecturers

Lecture

Submod: 0262bB3.1.1

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

This module comprises lectures (216221a), exercises (216221b) and a seminar (216221c) which have to be booked in conjunction. Note that registrations for this module open on 1.12.2018 and close on 18.01.2019 (Friday). Registrations are only possible via KVV https://kvv.imp.fu-berlin.de/vv/details?s=SS+19&lvnr=216221a bzw. https://kvv.imp.fu-berlin.de/portal/site/2843857c-01fb-4323-8afe-0fe1072ef663 You will receive an email confirming your registration within a week of the registration deadline. N.B.: For now, Master students in Computer Science can only register for the lectures and exercises (216221a and 216221b). This restriction, however, does not apply to Master students in Bioinformatics and Master students in Biochemistry.

Additional appointments

Appointment series

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221b

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1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221c

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

S Evolutionary Bioinformatics and Next-Generation Sequencing Applications

LV: 23781

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 23.03.2020 14:00

Pathophysiology: methods and findings

LV: 60101311

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 04.10.2019 12:00

Methods for clinical trials

LV: 60102001

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2 SWS

Geraldine Rauch

Lecture

Submod: 0262bB3.1.1

Akt: 04.10.2019 12:00

Thu, 14:00 - 17:00 (T9/046 Seminarraum)

Description

In this course, we introduce and discuss statistical methods and study design applied in clinical trials. Basic design aspects like randomization, blinding, the definition of control groups and endpoints will be discussed as well as different study types such as efficacy trials, equivalence and bioequivalence trials, phase I, II and III trials and principles of meta analyses. The related statistical models and test will be introduced as well. The aim of the lectures is to learn about biometrical thinking in the context of clinical trials which includes the application of statistical methods, but also critical thinking on the experimental setting.

Additional appointments

Appointment series

T9/046 Seminarraum

Geraldine Rauch

einmal, ab 17.10.2019, 14:00 - 17:00 (16 Termine)

Practice seminar for Methods for clinical trials

LV: 60102002

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1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 04.10.2019 12:00

Principles of gene regulation

LV: 60102211

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2 SWS

Robert Schöpflin

Seminar

Submod: 0262bB3.1.5

Akt: 04.10.2019 12:00

Tue, 14:00 - 16:00 (T9/053 Seminarraum)

Resampling techniques and their application

LV: 60102501

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2 SWS

Frank Konietschke

Lecture

Submod: 0262bB3.1.1

Akt: 04.10.2019 12:00

Wed, 14:00 - 17:00 (T9/046 Seminarraum)

Description

Resampling- methods are widely known as pretty robust and accurate procedures. We will explore different resampling methods in detail, e.g. drawing with replacement, permutations, wild bootstrap, etc. and find answers to the questions “When do Bootstrap methods work?” and “How do Bootstrap methods work?” Apart from these investigations, we will tackle efficient implementation of these methods using R. In this course, t-test type statistics, linear models, generalized linear models and selected ranking methods will be resampled using different technologies. This course is aspired for students to learn about modern statistical tools that were designed to make accurate conclusions when sample sizes are rather small.

Additional appointments

Appointment series

T9/046 Seminarraum

Frank Konietschke

einmal, ab 16.10.2019, 14:00 - 17:00 (16 Termine)

Practice seminar for Resampling techniques and their application

LV: 60102502

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1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 04.10.2019 12:00

Module: Forschungsmodul B (0262bB3.2)

Metabolic Networks

LV: 19401801

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2 SWS

Alexander Bockmayr

Lecture

Submod: 0262bB3.1.1

Akt: 27.08.2019 13:00

Mon, 10:00 - 12:00 (T9/049 Seminarraum)

Description

Additional appointments

Appointment series

T9/049 Seminarraum

Alexander Bockmayr

einmal, ab 14.10.2019, 10:00 - 12:00 (16 Termine)

Practice seminar for Metabolic Networks

LV: 19401802

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1 SWS

Alexander Bockmayr

Practice seminar

Submod: 0262bB3.1.3

Akt: 21.10.2019 10:00

Mon, 12:00 - 14:00 (T9/049 Seminarraum)

Journal Club Computational Biology

LV: 19402911

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 15.10.2019 18:00

Mon, 14:00 - 16:00 (T9/K 040 Multimediaraum)

Description

Content:

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/K 040 Multimediaraum

Knut Reinert

einmal, ab 14.10.2019, 14:00 - 16:00 (16 Termine)

Open science, data handling and ethical aspects in bioinformatics

LV: 19404611

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2 SWS

Thilo Muth

Seminar

Submod: 0262aA2.10.1

Akt: 13.11.2019 16:00

Wed, 10:00 - 12:00 (A6/SR 032 Seminarraum)

Description

Planned topics are as follows:

Open vs. closed Science: chances and risks of open science. Open access and traditional publishing.
Sustainable software development and reproducible research: open data and open source, code repositories, maintainability of software and code in the sciences
Laboratory information management systems: sample management, integration of instruments and application, data exchange
Bioinformatic workflows: Galaxy, Snakemake and KNIME
Containerized frameworks: Advantages of using Docker, Bioconda etc.
Information security and data protection: securing personalized data, relevance for data analyses in research, efficient handling guidelines of data security, potential issues with open science
Ethical issues, chances and risks of omics research: immense opportunities when manipulating genome information, novel ethical questions need to be asked, „right not to know“, danger of discrimination against individuals or groups based on genetic differences

Additional appointments

Appointment series

A6/SR 032 Seminarraum

Thilo Muth

einmal, ab 16.10.2019, 10:00 - 12:00 (16 Termine)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221a

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2 SWS

No lecturers

Lecture

Submod: 0262bB3.1.1

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221b

a.SAP verarbeitet

1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221c

a.SAP verarbeitet

2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

S Evolutionary Bioinformatics and Next-Generation Sequencing Applications

LV: 23781

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 23.03.2020 14:00

Pathophysiology: methods and findings

LV: 60101311

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 04.10.2019 12:00

Methods for clinical trials

LV: 60102001

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2 SWS

Geraldine Rauch

Lecture

Submod: 0262bB3.1.1

Akt: 04.10.2019 12:00

Thu, 14:00 - 17:00 (T9/046 Seminarraum)

Description

Additional appointments

Appointment series

T9/046 Seminarraum

Geraldine Rauch

einmal, ab 17.10.2019, 14:00 - 17:00 (16 Termine)

Practice seminar for Methods for clinical trials

LV: 60102002

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1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 04.10.2019 12:00

Principles of gene regulation

LV: 60102211

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2 SWS

Robert Schöpflin

Seminar

Submod: 0262bB3.1.5

Akt: 04.10.2019 12:00

Tue, 14:00 - 16:00 (T9/053 Seminarraum)

Resampling techniques and their application

LV: 60102501

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2 SWS

Frank Konietschke

Lecture

Submod: 0262bB3.1.1

Akt: 04.10.2019 12:00

Wed, 14:00 - 17:00 (T9/046 Seminarraum)

Description

Additional appointments

Appointment series

T9/046 Seminarraum

Frank Konietschke

einmal, ab 16.10.2019, 14:00 - 17:00 (16 Termine)

Practice seminar for Resampling techniques and their application

LV: 60102502

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1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 04.10.2019 12:00

Master Bioinformatik (SPO 2019) (0262c_MA120)

Module: Advanced Topics in Data Management (0089cA1.29)

Geospatial Databases

LV: 19304801

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2 SWS

Agnès Voisard

Lecture

Submod: 0089cA1.29.1

Akt: 27.08.2019 13:02

Tue, 14:00 - 16:00 (T9/046 Seminarraum)

Description

The goal of this course is to acquire the background of spatial databases, the kernel of Geographic Systems. The major aspects that will be handled are: modeling and querying geospatial information, spatial access methods (SAMs), data representation, basic operations (mostly from computational geometry), and optimization. Insights into current applications such as location-based services (e.g., navigation systems) will also be given. Knowledge in databases is necessary. This course encompasses: formal lectures, exercises, as well as a practical project with PostGIS.

References

Handouts are enough to understand the course.

The following book will be mostly used: P. Rigaux, M. Scholl, A. Voisard.Spatial Databases - With Application to GIS. Morgan Kaufmann, May 2001. 432 p. (copies in the main library)

Additional information

Zielgruppe: Studierende im Masterstudiengang

Voraussetzungen: Vorlesung: Einf. in Datenbanksysteme

Additional appointments

Appointment series

T9/046 Seminarraum

Agnès Voisard

einmal, ab 15.10.2019, 14:00 - 16:00 (16 Termine)

Practice seminar for Geospatial Databases

LV: 19304802

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2 SWS

Nicolas Lehmann

Practice seminar

Submod: 0089cA1.29.2

Akt: 27.08.2019 13:02

Thu, 14:00 - 16:00 (A7/SR 031)

Module: Advanced Analysis (0089cA2.1)

Advanced Algorithms

LV: 19303501

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4 SWS

Wolfgang Mulzer

Katharina Klost

Lecture

Submod: 0089cA2.1.1

Akt: 24.06.2020 14:39

Fri, 10:00 - 12:00 (T9/SR 005 Übungsraum)

Mon, 10:00 - 12:00 (T9/053 Seminarraum)

Description

The class focuses on topics such as

general principles of algorithm design,
network flows,
number-theoretic algorithms (including the RSA crypto system),
string matching,
NP-completeness,
approximation algorithms for hard problems,
arithmetic algorithms and circuits, fast fourier transform.

References

Cormen, Leiserson, Rivest, Stein: Introduction to Algorithms, 2nd Ed. McGraw-Hill 2001
Kleinberg, Tardos: Algorithm Design Addison-Wesley 2005.

Additional information

Target audience

All Master and Bachelor students who are interested in algorithms.

Prerequisites

Basic familiarity with the design and analysis of algorithms.

Additional appointments

Wolfgang Mulzer

Katharina Klost

02.12.2019 10:00 - 12:00

Klausur

T9/SR 005 Übungsraum

T9/Gr. Hörsaal

Wolfgang Mulzer

Katharina Klost

17.02.2020 14:00 - 16:00

Einsicht

T9/055 Seminarraum

Wolfgang Mulzer

Katharina Klost

20.02.2020 14:00 - 15:00

Nachklausur (der Termin findet im Raum L115, Seminarzentrum, Otto-von Simson Str.26 statt)

L 115 Seminarzentrum

Wolfgang Mulzer

Katharina Klost

03.08.2020 10:00 - 12:00

Appointment series

T9/SR 005 Übungsraum

Wolfgang Mulzer

Katharina Klost

einmal, ab 18.10.2019, 10:00 - 12:00 (16 Termine)

T9/053 Seminarraum

Wolfgang Mulzer

Katharina Klost

einmal, ab 14.10.2019, 10:00 - 12:00 (16 Termine)

Practice seminar for Advanced Algorithms

LV: 19303502

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2 SWS

Wolfgang Mulzer

Katharina Klost

Practice seminar

Submod: 0089cA2.1.2

Akt: 18.10.2019 16:00

Wed, 10:00 - 12:00 (T9/053 Seminarraum)

Wed, 08:00 - 10:00 (T9/055 Seminarraum)

Module: Current research topics in Complex Systems (0262cB1.5)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221c

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Module: Special aspects of Complex Systems (0262cB1.8)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221a

a.SAP verarbeitet

2 SWS

No lecturers

Lecture

Submod: 0262bB3.1.1

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221b

a.SAP verarbeitet

1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Module: Current research topics in Data Science in Life Sciences (0262cB2.5)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221c

a.SAP verarbeitet

2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Module: Special aspects of Data Science in the Life Sciences (0262cB2.10)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221a

a.SAP verarbeitet

2 SWS

No lecturers

Lecture

Submod: 0262bB3.1.1

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221b

a.SAP verarbeitet

1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Module: Current research topics in Advanced Algorithms (0262cB3.7)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221c

a.SAP verarbeitet

2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Module: Special aspects of Advanced Algorithms (0262cB3.9)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221a

a.SAP verarbeitet

2 SWS

No lecturers

Lecture

Submod: 0262bB3.1.1

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221b

a.SAP verarbeitet

1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 04.12.2019 18:00

Description

Futher details including key dates can be found at: https://kvv.imp.fu-berlin.de/x/Boxd1F

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Module: Foundations in Computer Science (0262cA1.1)

Foundations in Computer Science

LV: 19404901

a.SAP verarbeitet

2 SWS

Knut Reinert

Svenja Mehringer

Lecture

Submod: 0262cA1.1.1

Akt: 25.09.2020 16:00

Tue, 10:00 - 12:00 (T9/046 Seminarraum)

Description

In this lecture we will introduce concepts and methods of advanced algorithmics relevant to current reseach in bioinformatics. We will discuss Methods for the development and analysis of deterministic and randomised algorithms and foundations of compact data structures. Finally, the lecture will encompass concepts for parallel and vectorized computing. In more detail we will cover:

- Introduction into different kinds of algorithms and analysis methods
- Foundations of compact data structures
- Graph theiry and graph algorithms
- Analysis of randomized algorithms and data structures
- Introduction into parallel and vectorized computing
- Concepts, paradigms and frameworks for distributed computing

Additional appointments

Klausur

T9/046 Seminarraum

T9/049 Seminarraum

Knut Reinert

Svenja Mehringer

11.02.2020 10:00 - 12:00

Nachklausur

T9/SR 005 Übungsraum

Knut Reinert

Svenja Mehringer

06.10.2020 10:00 - 12:00

Appointment series

T9/046 Seminarraum

Knut Reinert

Svenja Mehringer

einmal, ab 15.10.2019, 10:00 - 12:00 (15 Termine)

Practice seminar for Foundations in Computer Science

LV: 19404902

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2 SWS

Sandro Andreotti

Knut Reinert

Svenja Mehringer

Practice seminar

Submod: 0262cA1.1.2

Akt: 31.10.2019 16:00

Tue, 14:00 - 16:00 (A7/SR 140 Seminarraum (Hinterhaus))

Tue, 12:00 - 14:00 (T9/046 Seminarraum)

Additional appointments

Appointment series

A7/SR 140 Seminarraum (Hinterhaus)

Sandro Andreotti

Knut Reinert

Svenja Mehringer

einmal, ab 22.10.2019, 14:00 - 16:00 (15 Termine)

T9/046 Seminarraum

Sandro Andreotti

Knut Reinert

Svenja Mehringer

einmal, ab 15.10.2019, 12:00 - 14:00 (16 Termine)

Module: Foundations in Mathematics and Statistics (0262cA1.2)

Foundations in Mathematics and Statistics

LV: 19405001

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2 SWS

Alexander Bockmayr

Lecture

Submod: 0262cA1.2.1

Akt: 31.10.2019 16:00

Thu, 10:00 - 12:00 (KöLu24-26/SR 006 Neuro/Mathe)

Description

In this course we introduce advanced mathematical concepts and methods from optimization, numerics and statistics relevant to current reseach in bioinformatics and systems biology. Topics of interest include:

- Linear optimization (Simplex algorithm, duality)
- Integer linear optimization (branch-and-bound, cutting planes, branch-and-cut)
- Local search and metaheuristics
- Ordinary differential equations (modeling, analysis, sensitivity)
- Linear models and test theory
- Classification
- Bootstrap and model evaluation
- Markov models (EM, HMM, MCMC)

Additional appointments

Appointment series

KöLu24-26/SR 006 Neuro/Mathe

Alexander Bockmayr

einmal, ab 17.10.2019, 10:00 - 12:00 (16 Termine)

Lecture for Foundations in Mathematics and Statistics

LV: 19405002

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2 SWS

Therese Lorenz

Alexander Bockmayr

Practice seminar

Submod: 0262cA1.2.2

Akt: 05.11.2019 14:00

Thu, 14:00 - 16:00 (KöLu24-26/SR 006 Neuro/Mathe)

Thu, 12:00 - 14:00 (KöLu24-26/SR 006 Neuro/Mathe)

Module: Foundations in Bio-Medicine (0262cA1.3)

Foundations in Bio-Medicine

LV: 60102401

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2 SWS

Dominik Seelow

Daniel Murad Ibrahim

Björn Fischer-Zirnsak

Martin Atta Mensah

Uwe Kornak

Lecture

Submod: 0262cA1.3.1

Akt: 31.10.2019 16:00

Wed, 10:00 - 12:00 (KöLu24-26/SR 006 Neuro/Mathe)

Description

Foundations in Bio-Medicine

This series of seminars and tutorials gives an introduction into how information is stored in the genome, how this information replicated and passed on to daughter cells and within the germline, and how it is read out to give rise to the living organism. The origin and consequences of germline and somatic genomic variability on the cellular and phenotypic level will be discussed as well as the methods for genome analysis including aspects of data processing and safety. Using different human hereditary disorders as examples pathological changes in cellular compartments and in the 3D structure of the genome and the consequences on gene regulation will be explained. The aim is a broad overview over the use of genomic data in clinical medicine.

Additional appointments

Appointment series

KöLu24-26/SR 006 Neuro/Mathe

Dominik Seelow

Daniel Murad Ibrahim

Björn Fischer-Zirnsak

Martin Atta Mensah

Uwe Kornak

einmal, ab 16.10.2019, 10:00 - 12:00 (16 Termine)

Practice Seminar for Foundations in Bio-Medicine

LV: 60102402

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2 SWS

Dominik Seelow

Daniel Murad Ibrahim

Björn Fischer-Zirnsak

Martin Atta Mensah

Uwe Kornak

Practice seminar

Submod: 0262cA1.3.2

Akt: 31.10.2019 16:00

Wed, 12:00 - 14:00 (KöLu24-26/SR 006 Neuro/Mathe)

Module: Introduction to Focus-Areas (0262cA1.4)

Seminar-style instruction for Introduction to Focus Areas

LV: 19405106

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2 SWS

Tim Conrad

Seminar-style instruction

Submod: 0262cA1.4.2

Akt: 12.10.2019 22:00

Mon, 12:00 - 14:00 (A6/SR 031 Seminarraum)

Introduction to Focus Areas

LV: 19405152

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2 SWS

Tim Conrad

Submod: 0262cA1.4.1

Akt: 05.12.2019 20:00

Mon, 10:00 - 12:00 (T9/SR 006 Seminarraum)

Description

The module presents interdisciplinary exemplary problems and approaches from the three focus areas "Data Science for Bioinformatics", "Complex Systems in Bioinformatics" and "Advanced Algorithms in Bioinformatics". During a project, teams work together on concrete tasks on selected topics from these focus areas. They develop concrete proposals for solutions to practice-oriented problems, implement them and present the results.

Additional appointments

Introduction to Focus Areas

A7/SR 031

Tim Conrad

25.11.2019 14:00 - 17:00

A7/SR 031

Tim Conrad

09.12.2019 14:00 - 17:00

Appointment series

T9/SR 006 Seminarraum

Tim Conrad

einmal, ab 21.10.2019, 10:00 - 12:00 (15 Termine)

General Professional Skills

ABV Bioinformatik (0261a_m30)

Module: GVP VII (subject-related) (5 CP) (0159bA1.11)

Work and Life Tools

LV: 19311720

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3 SWS

Lutz Prechelt

Course

Submod: 0159bA1.11.1

Akt: 28.10.2019 12:00

Thu, 16:00 - 18:00 (T9/049 Seminarraum)

Description

Work and Life Tools

In this course we will shed light on those questions which decisively influence a successful course of action in one's studies and profession and the success and contentment in private life.

These are mostly less technical abilities but rather characteristics: purposefullness, self confidence, ability to concentrate and relax, decision-making ability, clear communication, self-perception, motivation, stamina.

The purpose of this course is to trigger and improve a purposeful and self-motivated personal development.

Furthermore, it is explained how and why great parts of the so-called soft skills arise almost independently when developing the above-mentioned abilities.

This course is a seminar in the original sense: mainly a discussion in which each participant explores something on his/her own (in this case his/her own behavior). However, the format differs completely to what the title "Seminar" ususally suggests in Computer Science: there are no topics assigned, no presentations, no papers. It is about ... (Es geht um Bildung, nicht um Ausbildung)

The number of participants is limited; prior registration is necessary. The course requires study experience and therefor cannot be attended by first semesters.

I expect an open and commited particpation of all particpants. The course demands only a moderate expenditure of time, but a considerable input of will power.

References

wird in der Veranstaltung bekannt gegeben

Additional information

Duration

The weekly lecture is of three hours length.

Language

The course language is German.

Homepage

http://www.inf.fu-berlin.de/w/SE/KursArbeitsUndLebensmethodik2019

Additional appointments

Appointment series

T9/049 Seminarraum

Lutz Prechelt

einmal, ab 17.10.2019, 16:00 - 18:00 (16 Termine)

Technical Innovations and their Social Consequences

LV: 19320019

a.SAP verarbeitet

3 SWS

Lars Gerhold

Seminar with practice

Submod: 0159bA1.11.1

Akt: 14.10.2019 16:00

Fri, 10:00 - 11:30 (A7/SR 031)

Description

The lecture focuses on the interface between technology and society with respect to security solutions in different fields. Based on selected examples of research and development projects we shed light on the subjective perceptions of such technologies and the often unintended side effects they provoke. Moreover we will discuss why some technical solutions are socially more accepted than others. The lecture will bring together social science approaches of dealing with uncertainty and risk perception with technical case examples in an interdisciplinary manner.

Additional information

Information for students:

Limited to a maximum of 20 participants

The lecture will be held in german.

Additional appointments

Appointment series

A7/SR 031

Lars Gerhold

einmal, ab 18.10.2019, 10:00 - 11:30 (3 Termine)

Module: Work and life methodology (0159cA2.1)

Work and Life Tools

LV: 19311720

a.SAP verarbeitet

3 SWS

Lutz Prechelt

Course

Submod: 0159bA1.11.1

Akt: 28.10.2019 12:00

Thu, 16:00 - 18:00 (T9/049 Seminarraum)

Description

Work and Life Tools

In this course we will shed light on those questions which decisively influence a successful course of action in one's studies and profession and the success and contentment in private life.

The purpose of this course is to trigger and improve a purposeful and self-motivated personal development.

Furthermore, it is explained how and why great parts of the so-called soft skills arise almost independently when developing the above-mentioned abilities.

The number of participants is limited; prior registration is necessary. The course requires study experience and therefor cannot be attended by first semesters.

I expect an open and commited particpation of all particpants. The course demands only a moderate expenditure of time, but a considerable input of will power.

References

wird in der Veranstaltung bekannt gegeben

Additional information

Duration

The weekly lecture is of three hours length.

Language

The course language is German.

Homepage

http://www.inf.fu-berlin.de/w/SE/KursArbeitsUndLebensmethodik2019

Additional appointments

Appointment series

T9/049 Seminarraum

Lutz Prechelt

einmal, ab 17.10.2019, 16:00 - 18:00 (16 Termine)

Module: Business Start-ups in the IT Industry (0159cA2.2)

Technology Entrepreneurship

LV: 19316112

a.SAP verarbeitet

2 SWS

No lecturers

Project Seminar

Submod: 0159cA2.2.1

Akt: 27.08.2019 13:02

Description

I – LEARNING OBJECTIVES

This course introduces the fundamentals of technology entrepreneurship. Students will learn about the process technology entrepreneurs use to start innovative companies, e.g. Design Thinking, Effectuation or Business Modelling. To gain practical experience alongside the theory, students form teams together with engineers and scientists from Freie Universität Berlin (FU) and/or with Berlin-based companies. In these interdisciplinary teams, students will have the opportunity to experience hands-on interdisciplinary collaboration by developing real life innovation. The module is part of ESCP Europe’s and FU Berlin’s joint InnoBridge initiative (www.berlin-innobridge.de). Its ultimate goal is to foster the creation of technology based innovation in interdisciplinary teams.

II – LEARNING OUTCOMES

This course permits students to learn how technological innovations can be developed on the basis of current trends, new technologies and existing businesses. In particular, students will achieve the following learning goals:

method competencies of technology entrepreneurship
professional competences on the basis practical experience of the application of these methods in real life cases
interdisciplinary collaboration with company representatives as well as researchers

III – CONTENT

The course at hand views the interdisciplinary team building as part of the entrepreneurial process and will draw on the latest methods of innovation management as well as entrepreneurship research. During this course students will develop tangible innovation concepts together with managers and researchers. The course is split into four components:

methodological lectures
visits to companies and research institutes
work in project teams
participation in InnoBridge events (InnoMatch, InnoDrive, DemoDay)

IV – TEACHING METHODS

This course uses a broad range of teaching methods to empower students for their technology innovation challenges:

Readings, lectures and class discussions on concepts and tools
Real-life cases of entrepreneurial ventures
Group works to apply newly acquired knowledge and strengthen soft skills
Peer-to- peer workshops
Industry experts as guest speakers

During the work in project teams as well as during the InnoBridge events, all teams will have access to experienced mentors.

V - ABLAUF

See the German text.

VI – ASSESSMENT METHODS

The course is graded as follows:

Project team work including management of interdisciplinary collaboration (50 %)
Individual participation, involvement and co-creation (25 %)
Individual reflection paper (25 %)

The course is considered validated if the overall average grade is above 10/20 and if none of the module grades are inferior or equal to 7/20.

References

Brown, T., & Katz, B. (2011). Change by Design. Journal of Product Innovation Management, 28(3), 381–383.
Grichnik, D., Brettel, M., Koropp, C. & Mauer, R. (2010). Entrepreneurship: Unternehmerisches Denken, Entscheiden und Handeln in innovativen und technologieorientierten Unternehmungen. Schäffer-Poeschel Verlag.
Hoffmann, C., Lennerts, S., Schmitz, C., Stölzle, W., & Uebernickel, F. (ed.). (2016). Business Innovation: das St. Galler Modell. Springer Gabler.
Osterwalder, A., & Pigneur, Y. (2010). Business model generation: a handbook for visionaries, game changers, and challengers. John Wiley & Sons.
Osterwalder, A., Pigneur, Y., Bernarda, G., & Smith, A. (2014). Value proposition design. Strategyzer series. John Wiley & Sons.
Plattner, H., Meinel, C., & Leifer, L. (ed.). (2012). Design Thinking Research. Springer Berlin.
Ries, E. (2011). The lean startup: How today’s entrepreneurs use continuous innovation to create radically successful businesses. Random House LLC.
Schmiedgen, J., Köppen, E., & Meinel, C. (2015). Parts Without a Whole? Technische Berichte des Hasso-Plattner-Instituts für Softwaresystemtechnik an der Universität Potsdam, 97.

Additional appointments

Appointment series

Module: Social Aspects of Computer Science (0159cA2.3)

Technical Innovations and their Social Consequences

LV: 19320019

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3 SWS

Lars Gerhold

Seminar with practice

Submod: 0159bA1.11.1

Akt: 14.10.2019 16:00

Fri, 10:00 - 11:30 (A7/SR 031)

Description

Additional information

Information for students:

Limited to a maximum of 20 participants

The lecture will be held in german.

Additional appointments

Appointment series

A7/SR 031

Lars Gerhold

einmal, ab 18.10.2019, 10:00 - 11:30 (3 Termine)

Module: Planning, Implementing and Analysing a Tutorial in Computer Science (0159cA2.5)

Planning, Realisation and Analysis of a Tutorial

LV: 19302613

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2 SWS

Margarita Esponda-Argüero

Klaus Kriegel

Volker Roth

Matthias Wählisch

Claudia Müller-Birn

Lab Seminar

Submod: 0159cA2.5.1

Akt: 18.10.2019 20:00

Description

Content

In a preparatory colloquium, current teaching methods and advising for tutors are presented and discussed. This colloquium is specifically for students, which particularly want to guide exercise sessions as a tutor for the mathematics and computer science students. An interview with the selection committee will take place even during the holidays, in which will be decided about the suitability as a tutor.

After successful aptitude assessment a tutorial about a subjects of a lecture of the first four semesters bachelor study, should be prepare, expose, documented and analyzed.

References

Seifert, J. W.: Visualisieren Präsentieren Moderieren. GABAL Verlag, 16. Auflage 2001

Additional information

Time and location by appointment.

Additional appointments

Margarita Esponda-Argüero

Klaus Kriegel

Volker Roth

Matthias Wählisch

Claudia Müller-Birn

14.10.2019 10:00 - 12:00

Appointment series

Module: Principles of IT Project Management (0159cA2.6)

Project Management - Basics

LV: 19304506

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2 SWS

Matthias Horn

Seminar-style instruction

Submod: 0159cA2.6.1

Akt: 27.08.2019 13:02

Fri, 16:00 - 18:00 (T9/SR 006 Seminarraum)

Mon, 08:00 - 10:00 (T9/SR 006 Seminarraum)

Description

The professional life of almost each graduate of computer science will be comprised of software development or other computer technology related work organized in projects. Leading and being responsible for more or less big projects are important milestones in many career paths of computer scientists.

There is a number of widely accepted methodologies, tools and practices which can be applied to the variety of routine tasks and challenges within projects. The Project Management Institute has collected and systematized knowledge about project management and published it in the “Guide to the Project Management Body of Knowledge (PMBoK Guide)” as an ANSI standard.

Based on the PMBOK as a systematic blueprint this lecture covers the most important processes of project management throughout the typical lifecycle of a project. An accompanying case study as well as sample real life cases help understanding theoretical concepts.

There is a wide variety of software tools supporting project work. The lecture also covers typical tools one would use during a project. We will look more deeply at Microsoft Project as one of the most widespread project management tools.

The lecture series is split into two parts:

In winter term we cover basics of project management. The lecture shall enable participants to become a qualified project management assistant

Project setup, -definition, scope planning
Project time and cost planning
Project controlling and monitoring
Project status collection and reporting
Procurement
Project organization
Project closure
Usage of MS Project for these areas

The lecture during winter term is feasible for bachelor (Modul: Grundlagen des Managements von IT-Projekten) as well as master students (Modul: Projektmanagement).

References

A Guide to the Project Management Body of Knowledge - Fourth Edition (Project Management Institute), 2008

Additional information

Homepage

https://www.mi.fu-berlin.de/w/SE/VorlesungGrundlagenProjektmanagement2019

Additional appointments

Appointment series

T9/SR 006 Seminarraum

Matthias Horn

einmal, ab 18.10.2019, 16:00 - 18:00 (16 Termine)

T9/SR 006 Seminarraum

Matthias Horn

einmal, ab 14.10.2019, 08:00 - 10:00 (16 Termine)

Module: General Professional Skills I (subject-related) (5 CP) (0261aA1.21)

Lecture for Introduction to C++

LV: 19403720

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4 SWS

Sandro Andreotti

Chris Bielow

Course

Submod: 0261aA1.21.1

Akt: 27.08.2019 13:02

Mon, 13:00 - 17:00 (T9/K 036 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K 048 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K 038 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K46 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K 038 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K44 Rechnerpoolraum)

Mon, 10:00 - 12:00 (A6/SR 031 Seminarraum)

Description

Schedule

07.10.2019 - 11.10.2019

24.02.2020 - 06.03.2020

The course is held as a two-part block course over a total of three weeks. One week takes place before the lecture period (07.10.2019 - 11.10.2019) and two weeks after the lecture period (24.02.2020 - 06.03.2020). Every day there is a two-hour theoretical introduction. Afterwards, the theory is put into practice in a two-hour exercise (in the form of programming tasks). The course is aimed at students with little or no previous knowledge of C++. Previous knowledge of object-oriented programming is required.
Contents (preliminary planning)
1st week: Basics

    Basic language elements
    Creation of simple programs
    Compiler / Linker
    data types
    STL
     IO
    ...

2nd week: Deepening

object orientation
templates

Week 3: Mixed topics

    parallelization
    lambda expressions
    rValue References
    ....

Additional information

This course is primarily aimed at students of bioinformatics (in preparation for the module "Algorithms and Data Structures" in the third semester). Students of computer science are also allowed to participate, provided that places are available.

Additional appointments

Appointment series

T9/K 036 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 13:00 - 17:00 (5 Termine)

T9/K 048 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 13:00 - 17:00 (10 Termine)

T9/K 038 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 13:00 - 17:00 (10 Termine)

T9/K46 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 13:00 - 17:00 (10 Termine)

T9/K 038 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 13:00 - 17:00 (5 Termine)

T9/K44 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 13:00 - 17:00 (5 Termine)

A6/SR 031 Seminarraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 10:00 - 12:00 (5 Termine)

A6/SR 031 Seminarraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 10:00 - 12:00 (10 Termine)

Module: General Professional Skills II (subject-related) (5 CP) (0261aA1.22)

Scientific Work in Bioinformatics

LV: 19403910

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2 SWS

Sandro Andreotti

Proseminar

Submod: 0261aA1.22.1

Akt: 27.08.2019 13:02

Thu, 10:00 - 12:00 (A3/SR 119)

Module: General Professional Skills III (subject-related) (5 CP) (0261aA1.23)

Women in the History of Mathematics and Computer Science

LV: 19234810

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2 SWS

Anina Mischau

Proseminar

Submod: 0261aA1.23.1

Akt: 26.02.2020 16:00

Sat, 09:00 - 17:00 (A6/SR 025/026 Seminarraum)

Mon, 14:00 - 16:00 (A6/SR 025/026 Seminarraum)

Description

The seminar focuses on the development and rediscovery of the life stories and the work of some important mathematicians and computer scientists in the 19th and 20th centuries. The life and work of Sophie Germaine (1776-1831), Ada Lovelace (1815-1852), Sonja Kovalevskaya (1850-1891), Emmy Noether (1882-1935), Ruth Moufang (1905-1977), Grace Murray Hopper (1906-1992) and other female scientists are examined.

The seminar is not about highlighting these women as an exception, because it would only set them on their exotic status. Rather, it is about a historical contextualization of their life and work. This not only enables an exemplary examination of social and cultural inclusion and exclusion processes along the gender category, but also the development of new perspectives on the traditional cultural history of both disciplines. The seminar is based on the approach of researching or discovering learning, i.e. the students will independently prepare and present individual seminar topics in group work. These presentations will then be discussed in the seminar. Through the use of observation sheets, a feedback culture is also to be tested that will be helpful in dealing with pupils and/or colleagues in later professional life.

Additional information

For mathematicians and computer scientists in a monobachelor's degree, creditable as ABV!

Additional appointments

Appointment series

A6/SR 025/026 Seminarraum

Anina Mischau

einmal, ab 09.11.2019, 09:00 - 17:00 (3 Termine)

A6/SR 025/026 Seminarraum

Anina Mischau

einmal, ab 14.10.2019, 14:00 - 16:00 (4 Termine)

Module: Berufspraktikum (0261aA2.1)

Bioinformatics Internship

LV: 19402433

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0 SWS

No lecturers

Professional Internship

Submod: 0261aA2.1.1

Akt: 27.08.2019 13:02

Module: Principles of Marketing (0105cA4.2)

Marketing-Grundlagen (ABV)

LV: 109003

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4 SWS

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

Seminar

Submod: 0105cA4.2.1

Akt: 07.10.2019 16:00

Wed, 12:00 - 14:00 (Hs 105 Hörsaal)

Wed, 10:00 - 12:00 (Hs 104 Hörsaal)

Wed, 12:00 - 14:00 (Hs 105 Hörsaal)

Wed, 14:00 - 16:00 (Hs 107 Hörsaal)

Fri, 08:00 - 12:30 (Hs 105 Hörsaal)

Wed, 14:00 - 16:00 (Hs 107 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 105 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 16.10.2019, 12:00 - 14:00 (6 Termine)

Hs 104 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 16.10.2019, 10:00 - 12:00 (6 Termine)

Hs 104 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 06.11.2019, 10:00 - 12:00 (6 Termine)

Hs 105 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 06.11.2019, 12:00 - 14:00 (6 Termine)

Hs 107 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 16.10.2019, 14:00 - 16:00 (6 Termine)

Hs 105 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 25.10.2019, 08:00 - 12:30 (4 Termine)

Hs 107 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 06.11.2019, 14:00 - 16:00 (6 Termine)

Module: Principles of Business Administration (0105dA4.1)

Betriebswirtschaftliche Grundlagen (ABV)

LV: 109001

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4 SWS

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

Seminar

Submod: 0105dA4.1.1

Akt: 09.12.2019 12:00

Tue, 10:00 - 12:00 (Hs 104a Hörsaal)

Tue, 12:00 - 14:00 (Hs 102 Hörsaal)

Tue, 14:00 - 16:00 (Hs 107 Hörsaal)

Tue, 14:00 - 16:00 (Hs 102 Hörsaal)

Tue, 12:00 - 14:00 (Hs 104a Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 104a Hörsaal

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

einmal, ab 15.10.2019, 10:00 - 12:00 (16 Termine)

Hs 102 Hörsaal

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

einmal, ab 15.10.2019, 12:00 - 14:00 (16 Termine)

Hs 107 Hörsaal

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

einmal, ab 15.10.2019, 14:00 - 16:00 (16 Termine)

Hs 102 Hörsaal

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

einmal, ab 15.10.2019, 14:00 - 16:00 (16 Termine)

Hs 104a Hörsaal

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

einmal, ab 15.10.2019, 12:00 - 14:00 (16 Termine)

Module: Principles of Marketing (0105dA4.2)

Marketing-Grundlagen (ABV)

LV: 109003

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4 SWS

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

Seminar

Submod: 0105cA4.2.1

Akt: 07.10.2019 16:00

Wed, 12:00 - 14:00 (Hs 105 Hörsaal)

Wed, 10:00 - 12:00 (Hs 104 Hörsaal)

Wed, 12:00 - 14:00 (Hs 105 Hörsaal)

Wed, 14:00 - 16:00 (Hs 107 Hörsaal)

Fri, 08:00 - 12:30 (Hs 105 Hörsaal)

Wed, 14:00 - 16:00 (Hs 107 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 105 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 16.10.2019, 12:00 - 14:00 (6 Termine)

Hs 104 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 16.10.2019, 10:00 - 12:00 (6 Termine)

Hs 104 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 06.11.2019, 10:00 - 12:00 (6 Termine)

Hs 105 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 06.11.2019, 12:00 - 14:00 (6 Termine)

Hs 107 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 16.10.2019, 14:00 - 16:00 (6 Termine)

Hs 105 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 25.10.2019, 08:00 - 12:30 (4 Termine)

Hs 107 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 06.11.2019, 14:00 - 16:00 (6 Termine)

Module: Net Economy - Case Studies in the International Learning Network (GPP) (0105dA4.4)

Fallstudien im Internationalen Lernnetzwerk (ABV)

LV: 109019

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4 SWS

Martin Gersch

Lars Stegemann

Project Seminar

Submod: 0105dA4.4.1

Akt: 07.01.2020 16:00

Wed, 10:00 - 14:00 (315 Besprechungsraum)

ABV Bioinformatik (für Studierende, die nach der BSc STO/PO 2012 studieren) (0261b_m30)

Module: Principles of Business Administration (0105dA4.1)

Betriebswirtschaftliche Grundlagen (ABV)

LV: 109001

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4 SWS

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

Seminar

Submod: 0105dA4.1.1

Akt: 09.12.2019 12:00

Tue, 10:00 - 12:00 (Hs 104a Hörsaal)

Tue, 12:00 - 14:00 (Hs 102 Hörsaal)

Tue, 14:00 - 16:00 (Hs 107 Hörsaal)

Tue, 14:00 - 16:00 (Hs 102 Hörsaal)

Tue, 12:00 - 14:00 (Hs 104a Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 104a Hörsaal

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

einmal, ab 15.10.2019, 10:00 - 12:00 (16 Termine)

Hs 102 Hörsaal

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

einmal, ab 15.10.2019, 12:00 - 14:00 (16 Termine)

Hs 107 Hörsaal

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

einmal, ab 15.10.2019, 14:00 - 16:00 (16 Termine)

Hs 102 Hörsaal

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

einmal, ab 15.10.2019, 14:00 - 16:00 (16 Termine)

Hs 104a Hörsaal

Janina Sundermeier

Alisa Laila Fluhrer

Ireti Joanne Amojo

einmal, ab 15.10.2019, 12:00 - 14:00 (16 Termine)

Module: Principles of Marketing (0105dA4.2)

Marketing-Grundlagen (ABV)

LV: 109003

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4 SWS

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

Seminar

Submod: 0105cA4.2.1

Akt: 07.10.2019 16:00

Wed, 12:00 - 14:00 (Hs 105 Hörsaal)

Wed, 10:00 - 12:00 (Hs 104 Hörsaal)

Wed, 12:00 - 14:00 (Hs 105 Hörsaal)

Wed, 14:00 - 16:00 (Hs 107 Hörsaal)

Fri, 08:00 - 12:30 (Hs 105 Hörsaal)

Wed, 14:00 - 16:00 (Hs 107 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 105 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 16.10.2019, 12:00 - 14:00 (6 Termine)

Hs 104 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 16.10.2019, 10:00 - 12:00 (6 Termine)

Hs 104 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 06.11.2019, 10:00 - 12:00 (6 Termine)

Hs 105 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 06.11.2019, 12:00 - 14:00 (6 Termine)

Hs 107 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 16.10.2019, 14:00 - 16:00 (6 Termine)

Hs 105 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 25.10.2019, 08:00 - 12:30 (4 Termine)

Hs 107 Hörsaal

Manuel Schild

Gunnar Mau

Catalina Wache

Laura Elgeti

einmal, ab 06.11.2019, 14:00 - 16:00 (6 Termine)

Module: Net Economy - Case Studies in the International Learning Network (GPP) (0105dA4.4)

Fallstudien im Internationalen Lernnetzwerk (ABV)

LV: 109019

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4 SWS

Martin Gersch

Lars Stegemann

Project Seminar

Submod: 0105dA4.4.1

Akt: 07.01.2020 16:00

Wed, 10:00 - 14:00 (315 Besprechungsraum)

Module: Work and life methodology (0159cA2.1)

Work and Life Tools

LV: 19311720

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3 SWS

Lutz Prechelt

Course

Submod: 0159bA1.11.1

Akt: 28.10.2019 12:00

Thu, 16:00 - 18:00 (T9/049 Seminarraum)

Description

Work and Life Tools

In this course we will shed light on those questions which decisively influence a successful course of action in one's studies and profession and the success and contentment in private life.

The purpose of this course is to trigger and improve a purposeful and self-motivated personal development.

Furthermore, it is explained how and why great parts of the so-called soft skills arise almost independently when developing the above-mentioned abilities.

The number of participants is limited; prior registration is necessary. The course requires study experience and therefor cannot be attended by first semesters.

I expect an open and commited particpation of all particpants. The course demands only a moderate expenditure of time, but a considerable input of will power.

References

wird in der Veranstaltung bekannt gegeben

Additional information

Duration

The weekly lecture is of three hours length.

Language

The course language is German.

Homepage

http://www.inf.fu-berlin.de/w/SE/KursArbeitsUndLebensmethodik2019

Additional appointments

Appointment series

T9/049 Seminarraum

Lutz Prechelt

einmal, ab 17.10.2019, 16:00 - 18:00 (16 Termine)

Module: Business Start-ups in the IT Industry (0159cA2.2)

Technology Entrepreneurship

LV: 19316112

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2 SWS

No lecturers

Project Seminar

Submod: 0159cA2.2.1

Akt: 27.08.2019 13:02

Description

I – LEARNING OBJECTIVES

II – LEARNING OUTCOMES

method competencies of technology entrepreneurship
professional competences on the basis practical experience of the application of these methods in real life cases
interdisciplinary collaboration with company representatives as well as researchers

III – CONTENT

methodological lectures
visits to companies and research institutes
work in project teams
participation in InnoBridge events (InnoMatch, InnoDrive, DemoDay)

IV – TEACHING METHODS

This course uses a broad range of teaching methods to empower students for their technology innovation challenges:

Readings, lectures and class discussions on concepts and tools
Real-life cases of entrepreneurial ventures
Group works to apply newly acquired knowledge and strengthen soft skills
Peer-to- peer workshops
Industry experts as guest speakers

During the work in project teams as well as during the InnoBridge events, all teams will have access to experienced mentors.

V - ABLAUF

See the German text.

VI – ASSESSMENT METHODS

The course is graded as follows:

Project team work including management of interdisciplinary collaboration (50 %)
Individual participation, involvement and co-creation (25 %)
Individual reflection paper (25 %)

The course is considered validated if the overall average grade is above 10/20 and if none of the module grades are inferior or equal to 7/20.

References

Brown, T., & Katz, B. (2011). Change by Design. Journal of Product Innovation Management, 28(3), 381–383.
Grichnik, D., Brettel, M., Koropp, C. & Mauer, R. (2010). Entrepreneurship: Unternehmerisches Denken, Entscheiden und Handeln in innovativen und technologieorientierten Unternehmungen. Schäffer-Poeschel Verlag.
Hoffmann, C., Lennerts, S., Schmitz, C., Stölzle, W., & Uebernickel, F. (ed.). (2016). Business Innovation: das St. Galler Modell. Springer Gabler.
Osterwalder, A., & Pigneur, Y. (2010). Business model generation: a handbook for visionaries, game changers, and challengers. John Wiley & Sons.
Osterwalder, A., Pigneur, Y., Bernarda, G., & Smith, A. (2014). Value proposition design. Strategyzer series. John Wiley & Sons.
Plattner, H., Meinel, C., & Leifer, L. (ed.). (2012). Design Thinking Research. Springer Berlin.
Ries, E. (2011). The lean startup: How today’s entrepreneurs use continuous innovation to create radically successful businesses. Random House LLC.
Schmiedgen, J., Köppen, E., & Meinel, C. (2015). Parts Without a Whole? Technische Berichte des Hasso-Plattner-Instituts für Softwaresystemtechnik an der Universität Potsdam, 97.

Additional appointments

Appointment series

Module: Social Aspects of Computer Science (0159cA2.3)

Technical Innovations and their Social Consequences

LV: 19320019

a.SAP verarbeitet

3 SWS

Lars Gerhold

Seminar with practice

Submod: 0159bA1.11.1

Akt: 14.10.2019 16:00

Fri, 10:00 - 11:30 (A7/SR 031)

Description

Additional information

Information for students:

Limited to a maximum of 20 participants

The lecture will be held in german.

Additional appointments

Appointment series

A7/SR 031

Lars Gerhold

einmal, ab 18.10.2019, 10:00 - 11:30 (3 Termine)

Module: Planning, Implementing and Analysing a Tutorial in Computer Science (0159cA2.5)

Planning, Realisation and Analysis of a Tutorial

LV: 19302613

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2 SWS

Margarita Esponda-Argüero

Klaus Kriegel

Volker Roth

Matthias Wählisch

Claudia Müller-Birn

Lab Seminar

Submod: 0159cA2.5.1

Akt: 18.10.2019 20:00

Description

Content

After successful aptitude assessment a tutorial about a subjects of a lecture of the first four semesters bachelor study, should be prepare, expose, documented and analyzed.

References

Seifert, J. W.: Visualisieren Präsentieren Moderieren. GABAL Verlag, 16. Auflage 2001

Additional information

Time and location by appointment.

Additional appointments

Margarita Esponda-Argüero

Klaus Kriegel

Volker Roth

Matthias Wählisch

Claudia Müller-Birn

14.10.2019 10:00 - 12:00

Appointment series

Module: Principles of IT Project Management (0159cA2.6)

Project Management - Basics

LV: 19304506

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2 SWS

Matthias Horn

Seminar-style instruction

Submod: 0159cA2.6.1

Akt: 27.08.2019 13:02

Fri, 16:00 - 18:00 (T9/SR 006 Seminarraum)

Mon, 08:00 - 10:00 (T9/SR 006 Seminarraum)

Description

The lecture series is split into two parts:

In winter term we cover basics of project management. The lecture shall enable participants to become a qualified project management assistant

Project setup, -definition, scope planning
Project time and cost planning
Project controlling and monitoring
Project status collection and reporting
Procurement
Project organization
Project closure
Usage of MS Project for these areas

The lecture during winter term is feasible for bachelor (Modul: Grundlagen des Managements von IT-Projekten) as well as master students (Modul: Projektmanagement).

References

A Guide to the Project Management Body of Knowledge - Fourth Edition (Project Management Institute), 2008

Additional information

Homepage

https://www.mi.fu-berlin.de/w/SE/VorlesungGrundlagenProjektmanagement2019

Additional appointments

Appointment series

T9/SR 006 Seminarraum

Matthias Horn

einmal, ab 18.10.2019, 16:00 - 18:00 (16 Termine)

T9/SR 006 Seminarraum

Matthias Horn

einmal, ab 14.10.2019, 08:00 - 10:00 (16 Termine)

Module: General Professional Skills I (subject-related) (5 CP) (0261bA2.8)

Lecture for Introduction to C++

LV: 19403720

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4 SWS

Sandro Andreotti

Chris Bielow

Course

Submod: 0261aA1.21.1

Akt: 27.08.2019 13:02

Mon, 13:00 - 17:00 (T9/K 036 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K 048 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K 038 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K46 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K 038 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K44 Rechnerpoolraum)

Mon, 10:00 - 12:00 (A6/SR 031 Seminarraum)

Description

Schedule

07.10.2019 - 11.10.2019

24.02.2020 - 06.03.2020

    Basic language elements
    Creation of simple programs
    Compiler / Linker
    data types
    STL
     IO
    ...

2nd week: Deepening

object orientation
templates

Week 3: Mixed topics

    parallelization
    lambda expressions
    rValue References
    ....

Additional information

Additional appointments

Appointment series

T9/K 036 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 13:00 - 17:00 (5 Termine)

T9/K 048 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 13:00 - 17:00 (10 Termine)

T9/K 038 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 13:00 - 17:00 (10 Termine)

T9/K46 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 13:00 - 17:00 (10 Termine)

T9/K 038 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 13:00 - 17:00 (5 Termine)

T9/K44 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 13:00 - 17:00 (5 Termine)

A6/SR 031 Seminarraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 10:00 - 12:00 (5 Termine)

A6/SR 031 Seminarraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 10:00 - 12:00 (10 Termine)

Module: General Professional Skills II (subject-related) (5 CP) (0261bA2.9)

Scientific Work in Bioinformatics

LV: 19403910

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2 SWS

Sandro Andreotti

Proseminar

Submod: 0261aA1.22.1

Akt: 27.08.2019 13:02

Thu, 10:00 - 12:00 (A3/SR 119)

Module: General Professional Skills III (subject-related) (5 CP) (0261bA2.10)

Women in the History of Mathematics and Computer Science

LV: 19234810

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2 SWS

Anina Mischau

Proseminar

Submod: 0261aA1.23.1

Akt: 26.02.2020 16:00

Sat, 09:00 - 17:00 (A6/SR 025/026 Seminarraum)

Mon, 14:00 - 16:00 (A6/SR 025/026 Seminarraum)

Description

Additional information

For mathematicians and computer scientists in a monobachelor's degree, creditable as ABV!

Additional appointments

Appointment series

A6/SR 025/026 Seminarraum

Anina Mischau

einmal, ab 09.11.2019, 09:00 - 17:00 (3 Termine)

A6/SR 025/026 Seminarraum

Anina Mischau

einmal, ab 14.10.2019, 14:00 - 16:00 (4 Termine)

Module: Professional Internship (0261bA3.1)

Bioinformatics Internship

LV: 19402433

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0 SWS

No lecturers

Professional Internship

Submod: 0261aA2.1.1

Akt: 27.08.2019 13:02

Gesamtes Lehrangebot der Bioinformatik

Gesamtes Lehrangebot der Bioinformatik (E61a)

Module: Gesamtes Lehrangebot der Bioinformatik (E61aA1.1)

Graduation Ceremony

LV: 19000170

a.Publiziert

0 SWS

Rupert Klein

Begrüßungs- und Abschlussveranstaltung

Submod: E61aA1.1.1

Akt: 17.07.2019 11:12

Mentoring for International Students

LV: 19000246

a.Publiziert

2 SWS

No lecturers

Mentoring

Submod: E61aA1.1.1

Akt: 29.01.2020 05:53

Welcome address and introduction for Welcome for Undergraduate Students of Computer Sciences and Bioinformatics

LV: 19000370

a.Publiziert

0 SWS

Rupert Klein

Ulrike Seyferth

Begrüßungs- und Abschlussveranstaltung

Submod: E61aA1.1.1

Akt: 29.01.2020 05:53

Description

See German description.

Additional information

This event will take place once a semester.

Additional appointments

Begrüßungsveranstaltung für Studienanfänger*innen der Informatik und Bioinformatik

T9/Gr. Hörsaal

Rupert Klein

Ulrike Seyferth

14.10.2019 09:00 - 12:00

Begrüßung LA Informatik/Bioinformatik

T9/SR 005 Übungsraum

T9/055 Seminarraum

Rupert Klein

Ulrike Seyferth

14.10.2019 10:00 - 12:00

Appointment series

Women in the History of Mathematics and Computer Science

LV: 19234810

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2 SWS

Anina Mischau

Proseminar

Submod: 0261aA1.23.1

Akt: 26.02.2020 16:00

Sat, 09:00 - 17:00 (A6/SR 025/026 Seminarraum)

Mon, 14:00 - 16:00 (A6/SR 025/026 Seminarraum)

Description

Additional information

For mathematicians and computer scientists in a monobachelor's degree, creditable as ABV!

Additional appointments

Appointment series

A6/SR 025/026 Seminarraum

Anina Mischau

einmal, ab 09.11.2019, 09:00 - 17:00 (3 Termine)

A6/SR 025/026 Seminarraum

Anina Mischau

einmal, ab 14.10.2019, 14:00 - 16:00 (4 Termine)

AlDaBi

LV: 19400001

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2 SWS

Knut Reinert

Lecture

Submod: 0260cA1.3.1

Akt: 04.08.2020 14:00

Thu, 14:00 - 16:00 (Hs B (Raum B.004, 100 Pl.))

Description

In the exercises the above topics will be deepened, and techniques of analysis and evidence will be practised.

There is an associated practical course "Algorithmen und Datenstrukturen" (19401330). Please check there for further information!

References

Generelle Bücher/Basic reading:

Neil C. Jones, Pavel A. Pevzner: An Introduction to Bioinformatics Algorithms. MIT Press, Cambridge, MA, 2004. ISBN 0-262-10106-8
R. Durbin, S. Eddy, A. Krogh, G. Mitchison: Biological sequence analysis. Cambridge University Press, 1998. ISBN 0-521-62971-3
David B. Mount: Bioinformatics. Sequence and Genome Analysis. Cold Spring Harbor Laboratory Press, New York, 2001. ISBN 0-87969-608-7
Chao, Zhang: Sequence comparison, Theory and Methods: Springer, ISBN: 978-1-85800-319-4

Additional appointments

Review

A3/Hs 001 Hörsaal

Knut Reinert

06.12.2019 16:00 - 18:00

Nachklausur

A3/Hs 001 Hörsaal

Knut Reinert

30.09.2020 10:00 - 12:00

Appointment series

Hs B (Raum B.004, 100 Pl.)

Knut Reinert

einmal, ab 17.10.2019, 14:00 - 16:00 (15 Termine)

Practice seminar for AlDaBi

LV: 19400002

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2 SWS

Knut Reinert

Practice seminar

Submod: 0260cA1.3.2

Akt: 27.08.2019 13:00

Tue, 12:00 - 14:00 (A3/ 024 Seminarraum )

Tue, 08:00 - 10:00 (T9/046 Seminarraum)

Thu, 12:00 - 14:00 (T9/049 Seminarraum)

Wed, 12:00 - 14:00 (T9/046 Seminarraum)

Additional appointments

Appointment series

A3/ 024 Seminarraum

Knut Reinert

einmal, ab 15.10.2019, 12:00 - 14:00 (16 Termine)

T9/046 Seminarraum

Knut Reinert

einmal, ab 15.10.2019, 08:00 - 10:00 (16 Termine)

T9/049 Seminarraum

Knut Reinert

einmal, ab 17.10.2019, 12:00 - 14:00 (16 Termine)

T9/046 Seminarraum

Knut Reinert

einmal, ab 16.10.2019, 12:00 - 14:00 (16 Termine)

Orientation Weeks Bioinformatics

LV: 19400174

a.Publiziert

0 SWS

No lecturers

Orientierungswoche

Submod: E61aA1.1.1

Akt: 22.08.2019 22:03

Mathematics for Bioinformaticians I

LV: 19400201

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4 SWS

Knut Reinert

Markus Arthur Köbis

Lecture

Submod: 0260cA2.1.1

Akt: 04.08.2020 14:00

Tue, 14:00 - 16:00 (A3/Hs 001 Hörsaal)

Fri, 12:00 - 14:00 (A3/Hs 001 Hörsaal)

Description

See German text.

Additional appointments

Klausur

T9/Gr. Hörsaal

Knut Reinert

Markus Arthur Köbis

21.02.2020 12:00 - 14:00

Nachklausur

T9/Gr. Hörsaal

Knut Reinert

Markus Arthur Köbis

12.03.2020 12:00 - 14:00

Nachklausur

Hs 1a Hörsaal

Knut Reinert

Markus Arthur Köbis

29.09.2020 10:00 - 12:00

Appointment series

A3/Hs 001 Hörsaal

Knut Reinert

Markus Arthur Köbis

einmal, ab 15.10.2019, 14:00 - 16:00 (16 Termine)

A3/Hs 001 Hörsaal

Knut Reinert

Markus Arthur Köbis

einmal, ab 18.10.2019, 12:00 - 14:00 (16 Termine)

Practice seminar for Mathematics for Bioinformaticians I

LV: 19400202

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2 SWS

Knut Reinert

Markus Arthur Köbis

Practice seminar

Submod: 0260cA2.1.2

Akt: 27.09.2019 16:00

Wed, 12:00 - 14:00 (T9/049 Seminarraum)

Thu, 08:00 - 10:00 (T9/046 Seminarraum)

Tue, 16:00 - 18:00 (T9/049 Seminarraum)

Additional appointments

Appointment series

T9/049 Seminarraum

Knut Reinert

Markus Arthur Köbis

einmal, ab 16.10.2019, 12:00 - 14:00 (16 Termine)

T9/046 Seminarraum

Knut Reinert

Markus Arthur Köbis

einmal, ab 17.10.2019, 08:00 - 10:00 (16 Termine)

T9/049 Seminarraum

Knut Reinert

Markus Arthur Köbis

einmal, ab 15.10.2019, 16:00 - 18:00 (16 Termine)

Bioinformatics Research Internship

LV: 19400432

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0 SWS

No lecturers

Research Internship

Submod: 0262bA1.6.1

Akt: 13.07.2020 14:00

Numerics for Bioinformatics

LV: 19400601

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2 SWS

Max von Kleist

Lecture

Submod: 0262bA1.3.1

Akt: 08.07.2020 16:00

Mon, 14:00 - 16:00 (T9/055 Seminarraum)

Description

Content

Stochastic and differential equation modeling in systems biology
Numerical integrators (introduction to theory, strengths and weaknesses of different methods)
Stability- and Fixed Point Analysis
Parameter identification using maximum likelihood and Bayesian approaches

References

Literature

Stochastic Modelling for Systems Biology. Darren J. Wilkinson, CRC Press

Parameter Estimation and Inverse Problems Richard C. Aster, Elsevier

Additional information

Prerequisites

basic knowledge of Numerics

Additional appointments

Klausur

A6/SR 007/008 Seminarraum

Max von Kleist

27.07.2020 10:00 - 12:00

Appointment series

T9/055 Seminarraum

Max von Kleist

einmal, ab 14.10.2019, 14:00 - 16:00 (16 Termine)

Practice seminar for Numerics for Bioinformatics

LV: 19400602

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2 SWS

Max von Kleist

Practice seminar

Submod: 0262bA1.3.2

Akt: 30.10.2019 18:00

Mon, 16:00 - 18:00 (T9/055 Seminarraum)

Algorithmic Bioinformatics

LV: 19401201

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4 SWS

Martin Vingron

Birte Katharina Kehr

Lecture

Submod: 0260cA1.5.1

Akt: 05.03.2020 16:00

Mon, 12:00 - 14:00 (Hs B (Raum B.004, 100 Pl.))

Wed, 10:00 - 12:00 (Hs A (Raum B.006, 200 Pl.))

Description

Please see German description.

Additional appointments

Nachklausur

A3/Hs 001 Hörsaal

Martin Vingron

Birte Katharina Kehr

06.04.2020 10:00 - 13:00

Appointment series

Hs B (Raum B.004, 100 Pl.)

Martin Vingron

Birte Katharina Kehr

einmal, ab 14.10.2019, 12:00 - 14:00 (15 Termine)

Hs A (Raum B.006, 200 Pl.)

Martin Vingron

Birte Katharina Kehr

einmal, ab 16.10.2019, 10:00 - 12:00 (16 Termine)

Practice seminar for Algorithmic Bioinformatics

LV: 19401202

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2 SWS

Alena van Bömmel

Martin Vingron

Practice seminar

Submod: 0260cA1.5.2

Akt: 05.06.2020 16:00

Tue, 16:00 - 18:00 (T9/053 Seminarraum)

Tue, 14:00 - 16:00 (0.1.01 Hörsaal B)

Tue, 10:00 - 12:00 (0.1.01 Hörsaal B)

Tue, 12:00 - 14:00 (A3/019 Seminarraum)

Additional appointments

Appointment series

T9/053 Seminarraum

Alena van Bömmel

Martin Vingron

einmal, ab 15.10.2019, 16:00 - 18:00 (16 Termine)

0.1.01 Hörsaal B

Alena van Bömmel

Martin Vingron

einmal, ab 15.10.2019, 14:00 - 16:00 (16 Termine)

0.1.01 Hörsaal B

Alena van Bömmel

Martin Vingron

einmal, ab 15.10.2019, 10:00 - 12:00 (16 Termine)

A3/019 Seminarraum

Alena van Bömmel

Martin Vingron

einmal, ab 15.10.2019, 12:00 - 14:00 (16 Termine)

Internship for Algorithmic Bioinformatics

LV: 19401230

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2 SWS

No lecturers

Internship

Submod: 0260cA1.5.3

Akt: 16.01.2020 12:00

P: Algorithms and Data Structures

LV: 19401330

a.SAP verarbeitet

4 SWS

Chris Bielow

Internship

Submod: 0260cA1.6.1

Akt: 09.10.2019 10:00

Mon, 10:00 - 12:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Mon, 14:00 - 16:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Mon, 12:00 - 14:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Tue, 08:00 - 10:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Mon, 14:00 - 16:00 (T9/Gr. Hörsaal)

Description

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Chris Bielow

einmal, ab 21.10.2019, 10:00 - 12:00 (8 Termine)

A6/017 Frontalunterrichtsraum (Bioinf)

Chris Bielow

einmal, ab 21.10.2019, 14:00 - 16:00 (8 Termine)

A6/017 Frontalunterrichtsraum (Bioinf)

Chris Bielow

einmal, ab 21.10.2019, 12:00 - 14:00 (8 Termine)

A6/017 Frontalunterrichtsraum (Bioinf)

Chris Bielow

einmal, ab 22.10.2019, 08:00 - 10:00 (8 Termine)

T9/Gr. Hörsaal

Chris Bielow

einmal, ab 14.10.2019, 14:00 - 16:00 (8 Termine)

Metabolic Networks

LV: 19401801

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2 SWS

Alexander Bockmayr

Lecture

Submod: 0262bB3.1.1

Akt: 27.08.2019 13:00

Mon, 10:00 - 12:00 (T9/049 Seminarraum)

Description

Additional appointments

Appointment series

T9/049 Seminarraum

Alexander Bockmayr

einmal, ab 14.10.2019, 10:00 - 12:00 (16 Termine)

Practice seminar for Metabolic Networks

LV: 19401802

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1 SWS

Alexander Bockmayr

Practice seminar

Submod: 0262bB3.1.3

Akt: 21.10.2019 10:00

Mon, 12:00 - 14:00 (T9/049 Seminarraum)

Bioinformatics Internship

LV: 19402433

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0 SWS

No lecturers

Professional Internship

Submod: 0261aA2.1.1

Akt: 27.08.2019 13:02

Journal Club Computational Biology

LV: 19402911

a.SAP verarbeitet

2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 15.10.2019 18:00

Mon, 14:00 - 16:00 (T9/K 040 Multimediaraum)

Description

Content:

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/K 040 Multimediaraum

Knut Reinert

einmal, ab 14.10.2019, 14:00 - 16:00 (16 Termine)

Lecture for Introduction to C++

LV: 19403720

a.SAP verarbeitet

4 SWS

Sandro Andreotti

Chris Bielow

Course

Submod: 0261aA1.21.1

Akt: 27.08.2019 13:02

Mon, 13:00 - 17:00 (T9/K 036 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K 048 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K 038 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K46 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K 038 Rechnerpoolraum)

Mon, 13:00 - 17:00 (T9/K44 Rechnerpoolraum)

Mon, 10:00 - 12:00 (A6/SR 031 Seminarraum)

Description

Schedule

07.10.2019 - 11.10.2019

24.02.2020 - 06.03.2020

    Basic language elements
    Creation of simple programs
    Compiler / Linker
    data types
    STL
     IO
    ...

2nd week: Deepening

object orientation
templates

Week 3: Mixed topics

    parallelization
    lambda expressions
    rValue References
    ....

Additional information

Additional appointments

Appointment series

T9/K 036 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 13:00 - 17:00 (5 Termine)

T9/K 048 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 13:00 - 17:00 (10 Termine)

T9/K 038 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 13:00 - 17:00 (10 Termine)

T9/K46 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 13:00 - 17:00 (10 Termine)

T9/K 038 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 13:00 - 17:00 (5 Termine)

T9/K44 Rechnerpoolraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 13:00 - 17:00 (5 Termine)

A6/SR 031 Seminarraum

Sandro Andreotti

Chris Bielow

einmal, ab 07.10.2019, 10:00 - 12:00 (5 Termine)

A6/SR 031 Seminarraum

Sandro Andreotti

Chris Bielow

einmal, ab 24.02.2020, 10:00 - 12:00 (10 Termine)

Scientific Work in Bioinformatics

LV: 19403910

a.SAP verarbeitet

2 SWS

Sandro Andreotti

Proseminar

Submod: 0261aA1.22.1

Akt: 27.08.2019 13:02

Thu, 10:00 - 12:00 (A3/SR 119)

Welcome event for Master students of bioinformatics

LV: 19404070

a.Publiziert

0 SWS

Tim Conrad

Ulrike Seyferth

Begrüßungs- und Abschlussveranstaltung

Submod: E61aA1.1.1

Akt: 05.10.2019 12:51

Description

This information session is aimed at master's students in their first semester, especially those who did their bachelor's degree at another university (in Germany or a different country). Attendants will be provided with information on the organization and the content of their studies. Afterwards there will be the opportunity to talk to experienced master's students and get to know fellow students.

Additional appointments

Begrüßungsveranstaltung für Masterstudierende der Bioinformatik

A6/SR 032 Seminarraum

Tim Conrad

Ulrike Seyferth

14.10.2019 16:00 - 18:00

Appointment series

Mentoring Bioinformatics

LV: 19404146

a.Publiziert

0 SWS

No lecturers

Mentoring

Submod: E61aA1.1.1

Akt: 24.01.2020 13:50

Thu, 14:00 - 16:00 (T9/SR 005 ÜbungsraumT9/053 Seminarraum)

Fri, 10:00 - 12:00 (1.4.03 Seminarraum T2)

Description

The Mentoring Programme offers lectures to support and advise students especially during their first semesters. There are, however, also many lectures addressed to advanced students.

More information about the Mentoring Programme

Additional appointments

Info für MSc Studierende (höhere Semester) zur neuen SPO

A6/SR 032 Seminarraum

No lecturers

15.10.2019 16:00 - 18:00

Crashkurs R

A6/SR 032 Seminarraum

No lecturers

30.10.2019 14:00 - 16:00

Crashkurs Haskell

A6/SR 032 Seminarraum

No lecturers

06.11.2019 14:00 - 16:00

Crashkurs Haskell Bioinf

A6/SR 032 Seminarraum

No lecturers

20.11.2019 14:00 - 16:00

Zeitmanagement/Stressbewältigung

A3/Hs 001 Hörsaal

T9/SR 006 Seminarraum

No lecturers

22.11.2019 14:00 - 16:00

Praktikum und ABV

A7/SR 031

No lecturers

05.12.2019 16:00 - 18:00

Vorstellung Softwareprojekte

A6/SR 031 Seminarraum

No lecturers

31.01.2020 12:00 - 14:00

Vorstellung MSc

A7/SR 031

No lecturers

06.02.2020 16:00 - 18:00

Appointment series

T9/SR 005 Übungsraum

T9/053 Seminarraum

No lecturers

wöchentlich, ab 24.10.2019, 14:00 - 16:00 (15 Termine)

1.4.03 Seminarraum T2

No lecturers

wöchentlich, ab 25.10.2019, 10:00 - 12:00 (15 Termine)

Open science, data handling and ethical aspects in bioinformatics

LV: 19404611

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2 SWS

Thilo Muth

Seminar

Submod: 0262aA2.10.1

Akt: 13.11.2019 16:00

Wed, 10:00 - 12:00 (A6/SR 032 Seminarraum)

Description

Planned topics are as follows:

Open vs. closed Science: chances and risks of open science. Open access and traditional publishing.
Sustainable software development and reproducible research: open data and open source, code repositories, maintainability of software and code in the sciences
Laboratory information management systems: sample management, integration of instruments and application, data exchange
Bioinformatic workflows: Galaxy, Snakemake and KNIME
Containerized frameworks: Advantages of using Docker, Bioconda etc.
Information security and data protection: securing personalized data, relevance for data analyses in research, efficient handling guidelines of data security, potential issues with open science
Ethical issues, chances and risks of omics research: immense opportunities when manipulating genome information, novel ethical questions need to be asked, „right not to know“, danger of discrimination against individuals or groups based on genetic differences

Additional appointments

Appointment series

A6/SR 032 Seminarraum

Thilo Muth

einmal, ab 16.10.2019, 10:00 - 12:00 (16 Termine)

Foundations in Computer Science

LV: 19404901

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2 SWS

Knut Reinert

Svenja Mehringer

Lecture

Submod: 0262cA1.1.1

Akt: 25.09.2020 16:00

Tue, 10:00 - 12:00 (T9/046 Seminarraum)

Description

Additional appointments

Klausur

T9/046 Seminarraum

T9/049 Seminarraum

Knut Reinert

Svenja Mehringer

11.02.2020 10:00 - 12:00

Nachklausur

T9/SR 005 Übungsraum

Knut Reinert

Svenja Mehringer

06.10.2020 10:00 - 12:00

Appointment series

T9/046 Seminarraum

Knut Reinert

Svenja Mehringer

einmal, ab 15.10.2019, 10:00 - 12:00 (15 Termine)

Practice seminar for Foundations in Computer Science

LV: 19404902

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2 SWS

Sandro Andreotti

Knut Reinert

Svenja Mehringer

Practice seminar

Submod: 0262cA1.1.2

Akt: 31.10.2019 16:00

Tue, 14:00 - 16:00 (A7/SR 140 Seminarraum (Hinterhaus))

Tue, 12:00 - 14:00 (T9/046 Seminarraum)

Additional appointments

Appointment series

A7/SR 140 Seminarraum (Hinterhaus)

Sandro Andreotti

Knut Reinert

Svenja Mehringer

einmal, ab 22.10.2019, 14:00 - 16:00 (15 Termine)

T9/046 Seminarraum

Sandro Andreotti

Knut Reinert

Svenja Mehringer

einmal, ab 15.10.2019, 12:00 - 14:00 (16 Termine)

Foundations in Mathematics and Statistics

LV: 19405001

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2 SWS

Alexander Bockmayr

Lecture

Submod: 0262cA1.2.1

Akt: 31.10.2019 16:00

Thu, 10:00 - 12:00 (KöLu24-26/SR 006 Neuro/Mathe)

Description

Additional appointments

Appointment series

KöLu24-26/SR 006 Neuro/Mathe

Alexander Bockmayr

einmal, ab 17.10.2019, 10:00 - 12:00 (16 Termine)

Lecture for Foundations in Mathematics and Statistics

LV: 19405002

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2 SWS

Therese Lorenz

Alexander Bockmayr

Practice seminar

Submod: 0262cA1.2.2

Akt: 05.11.2019 14:00

Thu, 14:00 - 16:00 (KöLu24-26/SR 006 Neuro/Mathe)

Thu, 12:00 - 14:00 (KöLu24-26/SR 006 Neuro/Mathe)

Seminar-style instruction for Introduction to Focus Areas

LV: 19405106

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2 SWS

Tim Conrad

Seminar-style instruction

Submod: 0262cA1.4.2

Akt: 12.10.2019 22:00

Mon, 12:00 - 14:00 (A6/SR 031 Seminarraum)

Introduction to Focus Areas

LV: 19405152

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2 SWS

Tim Conrad

Submod: 0262cA1.4.1

Akt: 05.12.2019 20:00

Mon, 10:00 - 12:00 (T9/SR 006 Seminarraum)

Description

Additional appointments

Introduction to Focus Areas

A7/SR 031

Tim Conrad

25.11.2019 14:00 - 17:00

A7/SR 031

Tim Conrad

09.12.2019 14:00 - 17:00

Appointment series

T9/SR 006 Seminarraum

Tim Conrad

einmal, ab 21.10.2019, 10:00 - 12:00 (15 Termine)

S Evolutionary Bioinformatics and Next-Generation Sequencing Applications

LV: 23781

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 23.03.2020 14:00

Statistics I for biosciences

LV: 60100001

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2 SWS

Jochen Kruppa

Lecture

Submod: 0260cA2.5.1

Akt: 18.10.2019 18:00

Mon, 16:00 - 18:00 (Hs A (Raum B.006, 200 Pl.)A6/SR 031 Seminarraum)

Practice seminar for Statistics I for biosciences

LV: 60100002

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2 SWS

Jochen Kruppa

Practice seminar

Submod: 0260cA2.5.2

Akt: 15.10.2019 12:00

Tue, 10:00 - 12:00 (T9/055 Seminarraum)

Wed, 08:00 - 10:00 (T9/049 Seminarraum)

Tue, 16:00 - 18:00 (T9/055 Seminarraum)

Additional appointments

Appointment series

T9/055 Seminarraum

Jochen Kruppa

einmal, ab 15.10.2019, 10:00 - 12:00 (16 Termine)

T9/049 Seminarraum

Jochen Kruppa

einmal, ab 16.10.2019, 08:00 - 10:00 (16 Termine)

T9/055 Seminarraum

Jochen Kruppa

einmal, ab 15.10.2019, 16:00 - 18:00 (16 Termine)

Current topics in cell physiology

LV: 60100613

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4 SWS

No lecturers

Lab Seminar

Submod: 0262bB2.1.1

Akt: 04.10.2019 12:00

Description

Block course during the semester break.

Location: Charité Campus Benjamin Franklin (Steglitz, Hindenburgdamm 30), Institut für Klinische Physiologie

For further information: http://klinphys.charite.de/bioinfo/

or mail to Dorothee Günzel

These cells will be analyzed in the confocal laser scanning microscope and by other techniques. The results will be evaluated and interpreted in the context of the original hypitheses.

The experimental part will be flanked by seminars introducing the theoretical background and the various techniques.

The exact program of this course depends on the actual research of the institute and is tightly connected to our actual projects.

References

Additional information

Please bring lab coat, if available!

Additional appointments

Appointment series

Current questions of structural Bioinformatics

LV: 60101113

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4 SWS

No lecturers

Lab Seminar

Submod: 0262bB2.7.1

Akt: 10.07.2020 14:00

Description

Welcome to the practical course, please look into the link for the theory module for the basic idea about the course.

Structure of the course:

Topic for practical lectures are:

Introductory session
Homology modeling
3D molecular superimposition of small molecules
In silico screening, molecular fingerprints and chemical similarity
Natural products and fragments based drug discovery
In silico toxicity prediction
Personalized medicine

Website: http://bioinf-apache.charite.de/main/course_practical.php

Additional information

Max.no of particpants: 12

Language of instruction: English

Practical course: 16.03. - 27.03.2020, 8 days during 2 weeks, daily 10 am - 5 pm

Website : http://bioinf-apache.charite.de/main/course_practical.php

Additional appointments

Appointment series

Pathophysiology: methods and findings

LV: 60101311

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 04.10.2019 12:00

Computer-aided drug design

LV: 60101813

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4 SWS

No lecturers

Lab Seminar

Submod: 0262bB2.3.1

Akt: 29.01.2020 08:00

Description

Practical Course: Using open source software and libraries for data analysis and computer-aided drug design

There will be a short introductory part into python programming using the novel and interactive IPython notebooks.
The students will write their own scripts using, e.g., python libraries for data handling (pandas), protein (BioPython) and compound (RDKit) processing as well as machine learning (scikit-learn) to prepare their compound libraries.
Open access tools for protein structure preparation and visual inspection (PyMol) will be used.
AutoDock software will be engaged for docking of the compounds into the target protein and the results will be evaluated.

Additional information

Practical course date: 21.02.-02.03.2019, 5 days course, 2 days for self-study in-between, 9 am - 5 pm.
Preliminary meeting: In January 2019, exact date will be announced soon.

Place: Campus Mitte, Virchowweg 6 (or surrounding Charité Campus), 10117 Berlin

Research AG Volkamer

Additional appointments

Appointment series

Methods for clinical trials

LV: 60102001

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2 SWS

Geraldine Rauch

Lecture

Submod: 0262bB3.1.1

Akt: 04.10.2019 12:00

Thu, 14:00 - 17:00 (T9/046 Seminarraum)

Description

Additional appointments

Appointment series

T9/046 Seminarraum

Geraldine Rauch

einmal, ab 17.10.2019, 14:00 - 17:00 (16 Termine)

Practice seminar for Methods for clinical trials

LV: 60102002

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1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 04.10.2019 12:00

Principles of gene regulation

LV: 60102211

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2 SWS

Robert Schöpflin

Seminar

Submod: 0262bB3.1.5

Akt: 04.10.2019 12:00

Tue, 14:00 - 16:00 (T9/053 Seminarraum)

Foundations in Bio-Medicine

LV: 60102401

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2 SWS

Dominik Seelow

Daniel Murad Ibrahim

Björn Fischer-Zirnsak

Martin Atta Mensah

Uwe Kornak

Lecture

Submod: 0262cA1.3.1

Akt: 31.10.2019 16:00

Wed, 10:00 - 12:00 (KöLu24-26/SR 006 Neuro/Mathe)

Description

Foundations in Bio-Medicine

Additional appointments

Appointment series

KöLu24-26/SR 006 Neuro/Mathe

Dominik Seelow

Daniel Murad Ibrahim

Björn Fischer-Zirnsak

Martin Atta Mensah

Uwe Kornak

einmal, ab 16.10.2019, 10:00 - 12:00 (16 Termine)

Practice Seminar for Foundations in Bio-Medicine

LV: 60102402

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2 SWS

Dominik Seelow

Daniel Murad Ibrahim

Björn Fischer-Zirnsak

Martin Atta Mensah

Uwe Kornak

Practice seminar

Submod: 0262cA1.3.2

Akt: 31.10.2019 16:00

Wed, 12:00 - 14:00 (KöLu24-26/SR 006 Neuro/Mathe)

Resampling techniques and their application

LV: 60102501

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2 SWS

Frank Konietschke

Lecture

Submod: 0262bB3.1.1

Akt: 04.10.2019 12:00

Wed, 14:00 - 17:00 (T9/046 Seminarraum)

Description

Additional appointments

Appointment series

T9/046 Seminarraum

Frank Konietschke

einmal, ab 16.10.2019, 14:00 - 17:00 (16 Termine)

Practice seminar for Resampling techniques and their application

LV: 60102502

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1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 04.10.2019 12:00