Evento

Bachelor's programme in Bioinformatics

Bachelor's programme in Bioinformatics (2010 study regulations) (0260b_k150)

Module: Computerorientierte Mathematik II (0260bA2.4)

Computer-oriented Mathematics II

LV: 19211901

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2 SWS

Christof Schütte

Lecture

Submod: 0260bA2.4.1

Akt: 02.03.2022 10:45

Fri, 12:00 - 14:00 (T9/Gr. Hörsaal)

Description

Inhalt:

Die Auswahl der behandelten numerischen Verfahren enthält Polynominterpolation, Newton-Cotes-Formeln zur numerische Integration und Euler-Verfahren für lineare Differentialgleichungen.

Additional information

Studierende der Mathematik (Monobachelor und Lehramt) und Bioinformatik, sowie Numerikinteressierte aus Physik, Informatik und anderen Natur- und Geisteswissenschaften.

Additional appointments

Appointment series

T9/Gr. Hörsaal

Christof Schütte

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

Practice seminar for Computer-oriented Mathematics II

LV: 19211902

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2 SWS

Christof Schütte

Practice seminar

Submod: 0260bA2.4.2

Akt: 27.04.2022 11:26

Mon, 08:00 - 10:00 (A6/SR 009 Seminarraum)

Thu, 12:00 - 14:00 (A7/SR 140 Seminarraum (Hinterhaus))

Mon, 10:00 - 12:00 (A7/SR 140 Seminarraum (Hinterhaus))

Thu, 08:00 - 10:00 (A7/SR 140 Seminarraum (Hinterhaus))

Wed, 14:00 - 16:00 (A6/SR 009 Seminarraum)

Wed, 14:00 - 16:00 (A7/SR 031)

Fri, 08:00 - 10:00 (A6/SR 009 Seminarraum)

Tue, 16:00 - 18:00 (A6/SR 009 Seminarraum)

Fri, 14:00 - 16:00 (A6/SR 009 Seminarraum)

Additional appointments

Appointment series

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 25.04.2022, 08:00 - 10:00 (12 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Christof Schütte

einmal, ab 21.04.2022, 12:00 - 14:00 (13 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Christof Schütte

einmal, ab 25.04.2022, 10:00 - 12:00 (12 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Christof Schütte

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

A7/SR 031

Christof Schütte

einmal, ab 04.05.2022, 14:00 - 16:00 (12 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 22.04.2022, 08:00 - 10:00 (14 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 19.04.2022, 16:00 - 18:00 (14 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

Module: Fundamentals of Theoretical Computer Science (0086bA3.1)

Foundations of Theoretical Computer Science

LV: 19301201

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3 SWS

Wolfgang Mulzer

Lecture

Submod: 0086bA3.1.1

Akt: 06.05.2022 16:00

Wed, 10:00 - 12:00 (T9/Gr. Hörsaal)

Mon, 10:00 - 12:00 (T9/Gr. Hörsaal)

Description

Uwe Schöning, Theoretische Informatik kurzgefasst, 5. Auflage, Spektrum Akademischer Verlag, 2008
John E. Hopcroft, Rajeev Motwani, Jeffrey D. Ullman, Einführung in die Automatentheorie, Formale Sprachen und Komplexität, Pearson Studium, 3. Auflage, 2011
Ingo Wegener: Theoretische Informatik - Eine algorithmenorientierte Einführung, 2. Auflage, Teubner, 1999
Michael Sipser, Introduction to the Theory of Computation, 2nd ed., Thomson Course Technology, 2006
Wegener, Kompendium theoretische Informatik - Eine Ideensammlung, Teubner 1996

Additional appointments

Klausur

Hs 1a Hörsaal

Hs 1b Hörsaal

Hs 2 Hörsaal

Wolfgang Mulzer

27.07.2022 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Wolfgang Mulzer

einmal, ab 20.04.2022, 10:00 - 12:00 (13 Termine)

T9/Gr. Hörsaal

Wolfgang Mulzer

einmal, ab 25.04.2022, 10:00 - 12:00 (12 Termine)

Practice seminar for Foundations of Theoretical Computer Science

LV: 19301202

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2 SWS

Wolfgang Mulzer

Practice seminar

Submod: 0086bA3.1.2

Akt: 20.05.2022 12:00

Wed, 08:00 - 10:00 (T9/051 Seminarraum)

Tue, 14:00 - 16:00 (T9/SR 006 Seminarraum)

Wed, 14:00 - 16:00 (T9/046 Seminarraum)

Mon, 12:00 - 14:00 (T9/053 Seminarraum)

Thu, 16:00 - 18:00 (T9/051 Seminarraum)

Thu, 14:00 - 16:00 (T9/049 Seminarraum)

Wed, 16:00 - 18:00 (T9/049 Seminarraum)

Tue, 16:00 - 18:00 (T9/051 Seminarraum)

Fri, 14:00 - 16:00 (T9/SR 006 Seminarraum)

Tue, 08:00 - 10:00 (T9/053 Seminarraum)

Additional appointments

Appointment series

T9/051 Seminarraum

Wolfgang Mulzer

einmal, ab 20.04.2022, 08:00 - 10:00 (14 Termine)

T9/SR 006 Seminarraum

Wolfgang Mulzer

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

T9/046 Seminarraum

Wolfgang Mulzer

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

T9/053 Seminarraum

Wolfgang Mulzer

einmal, ab 25.04.2022, 12:00 - 14:00 (12 Termine)

T9/051 Seminarraum

Wolfgang Mulzer

einmal, ab 21.04.2022, 16:00 - 18:00 (13 Termine)

T9/049 Seminarraum

Wolfgang Mulzer

einmal, ab 21.04.2022, 14:00 - 16:00 (13 Termine)

T9/049 Seminarraum

Wolfgang Mulzer

einmal, ab 20.04.2022, 16:00 - 18:00 (14 Termine)

T9/051 Seminarraum

Wolfgang Mulzer

einmal, ab 19.04.2022, 16:00 - 18:00 (14 Termine)

T9/SR 006 Seminarraum

Wolfgang Mulzer

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

T9/053 Seminarraum

Wolfgang Mulzer

einmal, ab 19.04.2022, 08:00 - 10:00 (14 Termine)

Module: Database Systems (0086bA3.3)

Database Systems

LV: 19301501

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3 SWS

Agnès Voisard

Lecture

Submod: 0086bA3.3.1

Akt: 19.04.2022 12:32

Tue, 14:00 - 16:00 (Gr. Hörsaal (Raum B.001))

Tue, 14:00 - 16:00 (T9/Gr. Hörsaal)

Thu, 14:00 - 16:00 (T9/Gr. Hörsaal)

Description

Content

Database design with ERM/ERDD. Theoretical foundations of relational database systems: relational algebra, functional dependencies, normal forms. Relational database development: SQL data definitions, foreign keys and other integrity constraints, SQL as applicable language: essential language elements, embedding in programming language. Application programming; object-relational mapping. Security and protection concepts. Transaction subject, transactional guaranties, synchronization of multi user operations, fault tolerance features. Application and new developments: data warehousing, data mining, OLAP.

Project: the topics are deepened in an implementation project for student groups.

References

Alfons Kemper, Andre Eickler: Datenbanksysteme - Eine Einführung, 5. Auflage, Oldenbourg 2004
R. Elmasri, S. Navathe: Grundlagen von Datenbanksystemen, Pearson Studium, 2005

Additional information

Requirements

ALP 1 - Functional Programming
ALP 2 - Object-oriented Programming
ALP 3 - Data structures and data abstractions
OR Informatik B

Additional appointments

Appointment series

Gr. Hörsaal (Raum B.001)

Agnès Voisard

einmal, ab 12.07.2022, 14:00 - 16:00 (2 Termine)

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 21.04.2022, 14:00 - 16:00 (13 Termine)

Practice seminar for Database systems

LV: 19301502

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2 SWS

Agnès Voisard

Muhammed-Ugur Karagülle

Practice seminar

Submod: 0086bA3.3.2

Akt: 19.04.2022 18:00

Fri, 16:00 - 18:00 (T9/055 Seminarraum)

Wed, 10:00 - 12:00 (T9/046 Seminarraum)

Thu, 10:00 - 12:00 (T9/055 Seminarraum)

Fri, 14:00 - 16:00 (T9/046 Seminarraum)

Wed, 14:00 - 16:00 (T9/049 Seminarraum)

Thu, 10:00 - 12:00 (T9/046 Seminarraum)

Fri, 16:00 - 18:00 (T9/SR 005 Übungsraum)

Fri, 12:00 - 14:00 (A3/SR 120)

Fri, 14:00 - 16:00 (T9/055 Seminarraum)

Fri, 12:00 - 14:00 (T9/055 Seminarraum)

Additional appointments

Appointment series

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 16:00 - 18:00 (14 Termine)

T9/046 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 20.04.2022, 10:00 - 12:00 (14 Termine)

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 21.04.2022, 10:00 - 12:00 (13 Termine)

T9/046 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

T9/049 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

T9/046 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 21.04.2022, 10:00 - 12:00 (13 Termine)

T9/SR 005 Übungsraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 16:00 - 18:00 (14 Termine)

A3/SR 120

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

Bachelor's programme in Bioinformatics (2012 study regulations) (0260c_k150)

Module: Computer Science B (0260cA1.2)

Computer Science B

LV: 19302101

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4 SWS

Katharina Klost

Lecture

Submod: 0260cA1.2.1

Akt: 27.04.2022 11:32

Wed, 08:00 - 10:00 (T9/Gr. Hörsaal)

Fri, 08:00 - 10:00 (T9/Gr. Hörsaal)

Description

The class focuses on:

Fundations of programming: imperative and object-oriented programming
Algorithms and data structures: design and implementation of data structures
theory of algorithms

We use C++ as an implementation language.

Target Audience

Students with Computer Science as a minor concentration and students of bioinformatics.

References

Goodrich, Tamassia: Data Structures and Algorithms in C++
Stroustrup: Die C++ Programmiersprache
Cormen, Leiserson, Rivest, Stein: Introduction to Algorithms
Kleinberg, Tardos: Algorithm Design
Schöning: Algorithmen - kurz gefasst

Additional appointments

Klausur

Gr. Hörsaal (Raum B.001)

Katharina Klost

26.07.2022 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Katharina Klost

einmal, ab 20.04.2022, 08:00 - 10:00 (14 Termine)

T9/Gr. Hörsaal

Katharina Klost

einmal, ab 22.04.2022, 08:00 - 10:00 (14 Termine)

Practice seminar for Computer Science B

LV: 19302102

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2 SWS

Katharina Klost

Practice seminar

Submod: 0260cA1.2.2

Akt: 19.04.2022 18:00

Wed, 12:00 - 14:00 (A7/SR 031)

Thu, 08:00 - 10:00 (T9/053 Seminarraum)

Thu, 12:00 - 14:00 (T9/051 Seminarraum)

Thu, 10:00 - 12:00 (T9/053 Seminarraum)

Tue, 12:00 - 14:00 (T9/046 Seminarraum)

Fri, 12:00 - 14:00 (T9/046 Seminarraum)

Fri, 10:00 - 12:00 (T9/SR 005 Übungsraum)

Tue, 12:00 - 14:00 (A6/SR 007/008 Seminarraum)

Additional appointments

Appointment series

A7/SR 031

Katharina Klost

einmal, ab 20.04.2022, 12:00 - 14:00 (14 Termine)

T9/053 Seminarraum

Katharina Klost

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

T9/051 Seminarraum

Katharina Klost

einmal, ab 21.04.2022, 12:00 - 14:00 (13 Termine)

T9/053 Seminarraum

Katharina Klost

einmal, ab 21.04.2022, 10:00 - 12:00 (13 Termine)

T9/046 Seminarraum

Katharina Klost

einmal, ab 19.04.2022, 12:00 - 14:00 (14 Termine)

T9/046 Seminarraum

Katharina Klost

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

T9/SR 005 Übungsraum

Katharina Klost

einmal, ab 22.04.2022, 10:00 - 12:00 (14 Termine)

A6/SR 007/008 Seminarraum

Katharina Klost

einmal, ab 19.04.2022, 12:00 - 14:00 (14 Termine)

Module: Mathematik für Bioinformatiker II (0260cA2.2)

Mathematics for Bioinformaticians II

LV: 19402201

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4 SWS

Heike Siebert

Lecture

Submod: 0260cA2.2.1

Akt: 04.05.2022 12:00

Tue, 14:00 - 16:00 (A3/Hs 001 Hörsaal)

Wed, 10:00 - 12:00 (A3/Hs 001 Hörsaal)

Description

number systems: from natural numbers to real numbers, completeness property of the reals
polynomials: roots of polynomials, polynomial interpolation, rational functions
special functions: exponential function, logarithm, trigonometric functions
complex numbers: exponential function for complex numbers, complex roots
convergence of sequences and series, convergence of functions, continuous functions
differential calculus: derivative of a function, interpretations and applications of the derivative
intergral calculus: definite and indefinite integrals, fundamental theorem of calculus, applications
power series
Taylor series
basics of differential calculus for multivariate functions: partial derivative, gradient, Jacobi matrix
solution of simple differential equations

References

Kurt Meyberg, Peter Vachenauer: Höhere Mathematik 1, Springer-Verlag, 6.Auflage 2001
Dirk Hachenberger: Mathematik für Informatiker, Pearson 2005
Gerhard Berendt: Mathematische Grundlagen der Informatik, Band 2, B.I.-Wissenschaftsverlag; 1990
Thomas Westermann: Mathematik für Ingenieure mit Maple 1, Springer-Verlag, 4.Auflage 2005

Additional information

Target group:

Students of Bioinformatics (BSc, second semester)

Requirements:

Mathematik für Bioinformatiker I

Additional appointments

Appointment series

A3/Hs 001 Hörsaal

Heike Siebert

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

A3/Hs 001 Hörsaal

Heike Siebert

einmal, ab 20.04.2022, 10:00 - 12:00 (14 Termine)

Practice seminar for Mathematics for Bioinformaticians II

LV: 19402202

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2 SWS

Heike Siebert

Practice seminar

Submod: 0260cA2.2.2

Akt: 19.04.2022 18:00

Wed, 14:00 - 16:00 (A3/SR 120)

Fri, 12:00 - 14:00 (A6/SR 031 Seminarraum)

Fri, 14:00 - 16:00 (T9/049 Seminarraum)

Thu, 08:00 - 10:00 (T9/046 Seminarraum)

Additional appointments

Appointment series

A3/SR 120

Heike Siebert

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

A6/SR 031 Seminarraum

Heike Siebert

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

T9/049 Seminarraum

Heike Siebert

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

T9/046 Seminarraum

Heike Siebert

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

Module: Computerorientierte Mathematik II (0260cA2.4)

Computer-oriented Mathematics II

LV: 19211901

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2 SWS

Christof Schütte

Lecture

Submod: 0260bA2.4.1

Akt: 02.03.2022 10:45

Fri, 12:00 - 14:00 (T9/Gr. Hörsaal)

Description

Inhalt:

Die Auswahl der behandelten numerischen Verfahren enthält Polynominterpolation, Newton-Cotes-Formeln zur numerische Integration und Euler-Verfahren für lineare Differentialgleichungen.

Additional information

Studierende der Mathematik (Monobachelor und Lehramt) und Bioinformatik, sowie Numerikinteressierte aus Physik, Informatik und anderen Natur- und Geisteswissenschaften.

Additional appointments

Appointment series

T9/Gr. Hörsaal

Christof Schütte

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

Practice seminar for Computer-oriented Mathematics II

LV: 19211902

a.SAP verarbeitet

2 SWS

Christof Schütte

Practice seminar

Submod: 0260bA2.4.2

Akt: 27.04.2022 11:26

Mon, 08:00 - 10:00 (A6/SR 009 Seminarraum)

Thu, 12:00 - 14:00 (A7/SR 140 Seminarraum (Hinterhaus))

Mon, 10:00 - 12:00 (A7/SR 140 Seminarraum (Hinterhaus))

Thu, 08:00 - 10:00 (A7/SR 140 Seminarraum (Hinterhaus))

Wed, 14:00 - 16:00 (A6/SR 009 Seminarraum)

Wed, 14:00 - 16:00 (A7/SR 031)

Fri, 08:00 - 10:00 (A6/SR 009 Seminarraum)

Tue, 16:00 - 18:00 (A6/SR 009 Seminarraum)

Fri, 14:00 - 16:00 (A6/SR 009 Seminarraum)

Additional appointments

Appointment series

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 25.04.2022, 08:00 - 10:00 (12 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Christof Schütte

einmal, ab 21.04.2022, 12:00 - 14:00 (13 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Christof Schütte

einmal, ab 25.04.2022, 10:00 - 12:00 (12 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Christof Schütte

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

A7/SR 031

Christof Schütte

einmal, ab 04.05.2022, 14:00 - 16:00 (12 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 22.04.2022, 08:00 - 10:00 (14 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 19.04.2022, 16:00 - 18:00 (14 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

Module: Statistics for Biosciences II (0260cA2.6)

Statistics II for biosciences

LV: 60100101

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4 SWS

Maximilian Wechsung

Lecture

Submod: 0260cA2.6.1

Akt: 02.03.2022 10:45

Tue, 16:00 - 18:00 (T9/Gr. Hörsaal)

Fri, 16:00 - 18:00 (A3/Hs 001 Hörsaal)

Practice seminar for Statistics II for biosciences

LV: 60100102

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2 SWS

Maximilian Wechsung

Practice seminar

Submod: 0260cA2.6.2

Akt: 02.03.2022 10:45

Wed, 16:00 - 18:00 (T9/051 Seminarraum)

Wed, 16:00 - 18:00 (T9/053 Seminarraum)

Wed, 16:00 - 18:00 (A3/SR 119)

Additional appointments

Appointment series

T9/051 Seminarraum

Maximilian Wechsung

einmal, ab 20.04.2022, 16:00 - 18:00 (14 Termine)

T9/053 Seminarraum

Maximilian Wechsung

einmal, ab 20.04.2022, 16:00 - 18:00 (14 Termine)

A3/SR 119

Maximilian Wechsung

einmal, ab 20.04.2022, 16:00 - 18:00 (14 Termine)

Module: Molecular Biology and Biochemistry I (0260cA3.3)

Biochemie I - Grundlagen der Biochemie

LV: 21601a

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2 SWS

Markus Wahl

Florian Heyd

Helge Ewers

Lecture

Submod: 0260cA3.3.1

Akt: 02.03.2022 10:44

Wed, 12:00 - 14:00 (Hs Anorganik)

Description

Qualifikationsziele:
Die Studentinnen und Studenten kennen die Entstehung und molekulare Struktur der wichtigsten zellulären Makromoleküle und Stoffklassen sowie ihren biologischen Kontext. Der Schwerpunkt liegt auf einem chemischen Grundverständnis des molekularen Aufbaus von Biomolekülen.

Inhalte:
Chemische und zellbiologische Grundlagen, Struktur von DNA und RNA, Replikation und Transkription, Proteinbiosynthese, Regulation der Genexpression, gentechnologische Methoden, Aminosäuren und Peptide, Proteinstruktur und Proteinfaltung, Proteom, posttranslationale Modifikationen, Methoden der Proteinforschung, Enzyme, Kohlenhydrate, Lipide und Biomembranen, Einführung in den Stoffwechsel und die Stoffwechselregulation.

Prof. Dr. H. Ewers: helge.ewers@fu-berlin.de
Prof. Dr. F. Heyd: florian.heyd@fu-berlin.de
Prof. Dr. M. Wahl: mwahl@zedat.fu-berlin.de

Additional information for students

Entspricht Molekularbiologie und Biochemie I für Bioinformatiker.

Additional appointments

Vorbesprechung Biochemie I - Grundlagen der Biochemie

Hs Kristallographie

Markus Wahl

Florian Heyd

Helge Ewers

19.04.2022 12:00 - 14:00

Appointment series

Hs Anorganik

Markus Wahl

Florian Heyd

Helge Ewers

einmal, ab 20.04.2022, 12:00 - 14:00 (14 Termine)

Übungen zur Biochemie I - Grundlagen der Biochemie

LV: 21601b

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2 SWS

Markus Wahl

Florian Heyd

Helge Ewers

N.N.

Practice seminar

Submod: 0260cA3.3.2

Akt: 20.04.2022 12:00

Tue, 12:00 - 14:00 (SR Chemie-64 (Raum B.-132, UG1))

Thu, 12:00 - 14:00 (SR Chemie-24 (Raum B.-131, UG1))

Tue, 12:00 - 14:00 (Hs Kristallographie)

Tue, 12:00 - 14:00 (SR 34.16/17 )

Wed, 10:00 - 12:00 (SR 33.03 )

Wed, 10:00 - 12:00 (SR 34.16/17 )

Description

Qualifikationsziele: Die Studentinnen und Studenten kennen die Entstehung und molekulare Struktur der wichtigsten zellulären Makromoleküle und Stoffklassen sowie ihren biologischen Kontext. Der Schwerpunkt liegt auf einem chemischen Grundverständnis des molekularen Aufbaus von Biomolekülen. Inhalte: Chemische und zellbiologische Grundlagen, Struktur von DNA und RNA, Replikation und Transkription, Proteinbiosynthese, Regulation der Genexpression, gentechnologische Methoden, Aminosäuren und Peptide, Proteinstruktur und Proteinfaltung, Proteom, posttranslationale Modifikationen, Methoden der Proteinforschung, Enzyme, Kohlenhydrate, Lipide und Biomembranen, Einführung in den Stoffwechsel und die Stoffwechselregulation. Prof. Dr. H. Ewers: helge.ewers@fu-berlin.de Prof. Dr. F. Heyd: florian.heyd@fu-berlin.de Prof. Dr. M. Wahl: mwahl@zedat.fu-berlin.de

Additional information

Die Übungen finden n.V. in kleineren Gruppen i.d.R. dienstags von 12:00 - 14:00 Uhr bzw. mittwochs von 10:00 - 12:00 Uhr Uhr statt. Die Verteilung findet im Rahmen der Vorbesprechung (s. 21601a) statt.

Additional appointments

Appointment series

SR Chemie-64 (Raum B.-132, UG1)

Markus Wahl

Florian Heyd

Helge Ewers

N.N.

einmal, ab 26.04.2022, 12:00 - 14:00 (13 Termine)

SR Chemie-24 (Raum B.-131, UG1)

Markus Wahl

Florian Heyd

Helge Ewers

N.N.

einmal, ab 21.04.2022, 12:00 - 14:00 (12 Termine)

Hs Kristallographie

Markus Wahl

Florian Heyd

Helge Ewers

N.N.

einmal, ab 26.04.2022, 12:00 - 14:00 (13 Termine)

SR 34.16/17

Markus Wahl

Florian Heyd

Helge Ewers

N.N.

einmal, ab 26.04.2022, 12:00 - 14:00 (13 Termine)

SR 33.03

Markus Wahl

Florian Heyd

Helge Ewers

N.N.

einmal, ab 27.04.2022, 10:00 - 12:00 (13 Termine)

SR 34.16/17

Markus Wahl

Florian Heyd

Helge Ewers

N.N.

einmal, ab 27.04.2022, 10:00 - 12:00 (13 Termine)

Module: Molecular Biology and Biochemistry III (0260cA3.5)

Molekularbiologie und Biochemie III

LV: 21699a

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2 SWS

Sigmar Stricker

Holger Sieg

Sutapa Chakrabarti

Lecture

Submod: 0260cA3.5.1

Akt: 02.03.2022 10:44

Fri, 10:00 - 12:00 (Hs A (Raum B.006, 200 Pl.))

Additional information

Qualifikationsziele:
Das in Molekularbiologie und Biochemie II erlangte Grundlagenverständnis wird in den Zusammenhang komplexer biologischer Systeme gestellt. Diese sind:
Verständnis der Rezeptorvermittelten Signaltransduktion und der Regulation von Zellzyklus und Zelltod.
Verständnis der molekularbiologischen und zellbiologischen Eigenschaften von metastasierenden Tumorzellen
Verständnis der Wechselwirkungen von Pathogenen, Wirtszellen und Immunsystem
Verständnis der Prinzipien der DNA-Medizin

Inhalte:
Wachstumsfaktoren, Rezeptoren und Signaltransduktion zur Regulation von Zellzyklus und Zelltod
Grundlagen der Immunologie: angeborene, erworbene Immunabwehr
Antigen-präsentierende Zellen, Effektorzellen
PAMP- und DAMP-Konzepte der Antigen-Prozessierung bei Infektion und Tumor-Bekämpfung
DNA-Medizin und Gentherapie

Additional information for students

Vorlesung für Studierende der Bioinformatik

Additional appointments

Hs A (Raum B.006, 200 Pl.)

Sigmar Stricker

Holger Sieg

Sutapa Chakrabarti

07.10.2022 10:00 - 12:00

Appointment series

Hs A (Raum B.006, 200 Pl.)

Sigmar Stricker

Holger Sieg

Sutapa Chakrabarti

einmal, ab 22.04.2022, 10:00 - 12:00 (13 Termine)

Übungen zu Molekularbiologie und Biochemie III

LV: 21699b

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2 SWS

Sigmar Stricker

Holger Sieg

Sutapa Chakrabarti

Practice seminar

Submod: 0260cA3.5.2

Akt: 02.03.2022 10:44

Wed, 14:00 - 16:00 (Hs A (Raum B.006, 200 Pl.))

Additional information

Additional information for students

Übungen zu 21699a für Studierende der Bioinformatik

Additional appointments

Appointment series

Hs A (Raum B.006, 200 Pl.)

Sigmar Stricker

Holger Sieg

Sutapa Chakrabarti

einmal, ab 27.04.2022, 14:00 - 16:00 (12 Termine)

Module: Medizinische Physiologie (0260cA3.7)

Medical Physiology

LV: 60100201

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2 SWS

No lecturers

Lecture

Submod: 0260cA3.7.1

Akt: 02.03.2022 10:45

Seminar for Medical Physiology

LV: 60100211

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2 SWS

No lecturers

Seminar

Submod: 0260cA3.7.2

Akt: 02.03.2022 10:45

Practical course for Medical Physiology

LV: 60100230

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2 SWS

No lecturers

Internship

Submod: 0260cA3.7.3

Akt: 02.03.2022 10:45

Module: Database Systems (0260cA4.1)

Database Systems

LV: 19301501

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3 SWS

Agnès Voisard

Lecture

Submod: 0086bA3.3.1

Akt: 19.04.2022 12:32

Tue, 14:00 - 16:00 (Gr. Hörsaal (Raum B.001))

Tue, 14:00 - 16:00 (T9/Gr. Hörsaal)

Thu, 14:00 - 16:00 (T9/Gr. Hörsaal)

Description

Content

Project: the topics are deepened in an implementation project for student groups.

References

Alfons Kemper, Andre Eickler: Datenbanksysteme - Eine Einführung, 5. Auflage, Oldenbourg 2004
R. Elmasri, S. Navathe: Grundlagen von Datenbanksystemen, Pearson Studium, 2005

Additional information

Requirements

ALP 1 - Functional Programming
ALP 2 - Object-oriented Programming
ALP 3 - Data structures and data abstractions
OR Informatik B

Additional appointments

Appointment series

Gr. Hörsaal (Raum B.001)

Agnès Voisard

einmal, ab 12.07.2022, 14:00 - 16:00 (2 Termine)

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 21.04.2022, 14:00 - 16:00 (13 Termine)

Practice seminar for Database systems

LV: 19301502

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2 SWS

Agnès Voisard

Muhammed-Ugur Karagülle

Practice seminar

Submod: 0086bA3.3.2

Akt: 19.04.2022 18:00

Fri, 16:00 - 18:00 (T9/055 Seminarraum)

Wed, 10:00 - 12:00 (T9/046 Seminarraum)

Thu, 10:00 - 12:00 (T9/055 Seminarraum)

Fri, 14:00 - 16:00 (T9/046 Seminarraum)

Wed, 14:00 - 16:00 (T9/049 Seminarraum)

Thu, 10:00 - 12:00 (T9/046 Seminarraum)

Fri, 16:00 - 18:00 (T9/SR 005 Übungsraum)

Fri, 12:00 - 14:00 (A3/SR 120)

Fri, 14:00 - 16:00 (T9/055 Seminarraum)

Fri, 12:00 - 14:00 (T9/055 Seminarraum)

Additional appointments

Appointment series

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 16:00 - 18:00 (14 Termine)

T9/046 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 20.04.2022, 10:00 - 12:00 (14 Termine)

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 21.04.2022, 10:00 - 12:00 (13 Termine)

T9/046 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

T9/049 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

T9/046 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 21.04.2022, 10:00 - 12:00 (13 Termine)

T9/SR 005 Übungsraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 16:00 - 18:00 (14 Termine)

A3/SR 120

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

Module: Fundamentals of Theoretical Computer Science (0260cA4.2)

Foundations of Theoretical Computer Science

LV: 19301201

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3 SWS

Wolfgang Mulzer

Lecture

Submod: 0086bA3.1.1

Akt: 06.05.2022 16:00

Wed, 10:00 - 12:00 (T9/Gr. Hörsaal)

Mon, 10:00 - 12:00 (T9/Gr. Hörsaal)

Description

Uwe Schöning, Theoretische Informatik kurzgefasst, 5. Auflage, Spektrum Akademischer Verlag, 2008
John E. Hopcroft, Rajeev Motwani, Jeffrey D. Ullman, Einführung in die Automatentheorie, Formale Sprachen und Komplexität, Pearson Studium, 3. Auflage, 2011
Ingo Wegener: Theoretische Informatik - Eine algorithmenorientierte Einführung, 2. Auflage, Teubner, 1999
Michael Sipser, Introduction to the Theory of Computation, 2nd ed., Thomson Course Technology, 2006
Wegener, Kompendium theoretische Informatik - Eine Ideensammlung, Teubner 1996

Additional appointments

Klausur

Hs 1a Hörsaal

Hs 1b Hörsaal

Hs 2 Hörsaal

Wolfgang Mulzer

27.07.2022 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Wolfgang Mulzer

einmal, ab 20.04.2022, 10:00 - 12:00 (13 Termine)

T9/Gr. Hörsaal

Wolfgang Mulzer

einmal, ab 25.04.2022, 10:00 - 12:00 (12 Termine)

Practice seminar for Foundations of Theoretical Computer Science

LV: 19301202

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2 SWS

Wolfgang Mulzer

Practice seminar

Submod: 0086bA3.1.2

Akt: 20.05.2022 12:00

Wed, 08:00 - 10:00 (T9/051 Seminarraum)

Tue, 14:00 - 16:00 (T9/SR 006 Seminarraum)

Wed, 14:00 - 16:00 (T9/046 Seminarraum)

Mon, 12:00 - 14:00 (T9/053 Seminarraum)

Thu, 16:00 - 18:00 (T9/051 Seminarraum)

Thu, 14:00 - 16:00 (T9/049 Seminarraum)

Wed, 16:00 - 18:00 (T9/049 Seminarraum)

Tue, 16:00 - 18:00 (T9/051 Seminarraum)

Fri, 14:00 - 16:00 (T9/SR 006 Seminarraum)

Tue, 08:00 - 10:00 (T9/053 Seminarraum)

Additional appointments

Appointment series

T9/051 Seminarraum

Wolfgang Mulzer

einmal, ab 20.04.2022, 08:00 - 10:00 (14 Termine)

T9/SR 006 Seminarraum

Wolfgang Mulzer

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

T9/046 Seminarraum

Wolfgang Mulzer

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

T9/053 Seminarraum

Wolfgang Mulzer

einmal, ab 25.04.2022, 12:00 - 14:00 (12 Termine)

T9/051 Seminarraum

Wolfgang Mulzer

einmal, ab 21.04.2022, 16:00 - 18:00 (13 Termine)

T9/049 Seminarraum

Wolfgang Mulzer

einmal, ab 21.04.2022, 14:00 - 16:00 (13 Termine)

T9/049 Seminarraum

Wolfgang Mulzer

einmal, ab 20.04.2022, 16:00 - 18:00 (14 Termine)

T9/051 Seminarraum

Wolfgang Mulzer

einmal, ab 19.04.2022, 16:00 - 18:00 (14 Termine)

T9/SR 006 Seminarraum

Wolfgang Mulzer

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

T9/053 Seminarraum

Wolfgang Mulzer

einmal, ab 19.04.2022, 08:00 - 10:00 (14 Termine)

Master's programme in Bioinformatics

M.Sc. in Bioinformatics (2012 study regulations) (0262b_MA120)

Module: Research Lab (0262bA1.6)

Bioinformatics Research Internship

LV: 19400432

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0 SWS

No lecturers

Research Internship

Submod: 0262bA1.6.1

Akt: 02.03.2022 10:45

Module: Biodiversität und Evolution (0262bB1.1)

Biodiversität und Evolution/ Biodiversity and Evolution (V)

LV: 23789a

a.In Planung

2 SWS

No lecturers

Lecture

Submod: 0262bB1.1.1

Akt: 22.02.2022 17:15

Biodiversität und Evolution / Biodiversity and Evolution (Ü)

LV: 23789b

a.In Planung

1 SWS

No lecturers

Practice seminar

Submod: 0262bB1.1.2

Akt: 22.02.2022 17:14

Biodiversität und Evolution / Biodiversity and Evolution (S)

LV: 23789c

a.In Planung

2 SWS

No lecturers

Seminar

Submod: 0262bB1.1.3

Akt: 22.02.2022 17:14

Module: Netzwerkanalyse (0262bB1.3)

Complex Systems in Bioinformatics

LV: 19405201

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2 SWS

Heike Siebert

Martin Vingron

Jana Wolf

Lecture

Submod: 0262bB1.3.1

Akt: 21.04.2022 18:00

Tue, 12:00 - 14:00 (A7/SR 031)

Description

Students have acquired a deeper understanding of fundamental mathematical and algorithmic concepts in the field of modeling, simulation and analysis of complex biological systems against the background of current research trends in system biology and biotechnology. They are capable of analyzing a given biological or medical problem, selecting a suitable modeling approach, independently developing a solution and assessing and communicating the results.

Content:

Topics from the following areas are considered in depth:

- Network structure analysis

- Graphical modeling

- Modeling of biochemical networks using standard differential equations

- Discrete modeling of regulatory networks

- Constraint-based modeling

- Stochastic and hybrid modeling

References

wird in der Veranstaltung bekanntgegeben.

Additional appointments

Appointment series

A7/SR 031

Heike Siebert

Martin Vingron

Jana Wolf

einmal, ab 19.04.2022, 12:00 - 14:00 (14 Termine)

Practice seminar for Complex Systems in Bioinformatics

LV: 19405202

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2 SWS

Heike Siebert

Martin Vingron

Jana Wolf

Practice seminar

Submod: 0262bB1.3.2

Akt: 21.04.2022 18:00

Thu, 10:00 - 12:00 (A7/SR 031)

Seminar for Complex Systems in Bioinformatics

LV: 19405211

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2 SWS

Heike Siebert

Martin Vingron

Jana Wolf

Seminar

Submod: 0262bB1.3.3

Akt: 21.04.2022 18:00

Thu, 12:00 - 14:00 (A7/SR 031)

Module: Sequenzanalyse (0262bB1.5)

Advanced Algorithms in Bioinformatics

LV: 19405301

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2 SWS

Knut Reinert

Lecture

Submod: 0262bB1.5.1

Akt: 02.03.2022 10:45

Tue, 10:00 - 12:00 (A3/ 024 Seminarraum )

Description

Goals:

The students will gain a deeper unterstanding for basic algorithmic concepts for the analysis of genomic sequencing related to state of the art research in bioinformatics and biotechnology. They will learn various paradigms for the approximate search. They will know which algorithms should be preferred under what circumstances and are able to grasp key concepts of scientific publications related to this field.

Some examples of subjects that will be more deeply discussed:

Paradigms for approximative, semiglobal alignments (read mapping)
Methods for genomic assembly and metagenomic assembly
Methods for the identification of genetic variants (SNVs, SNPs, CNVs) - algorithmic problems of quantifying expession using NGS data

For further information go to: https://mycampus.imp.fu-berlin.de/portal

Additional appointments

Appointment series

A3/ 024 Seminarraum

Knut Reinert

einmal, ab 19.04.2022, 10:00 - 12:00 (14 Termine)

Practice seminar for Advanced Algorithms in Bioinformatics

LV: 19405302

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2 SWS

Knut Reinert

Practice seminar

Submod: 0262bB1.5.2

Akt: 19.04.2022 18:00

Tue, 08:00 - 10:00 (A3/ 024 Seminarraum )

Seminar for Advanced Algorithms in Bioinformatics

LV: 19405311

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB1.5.3

Akt: 02.03.2022 10:45

Thu, 14:00 - 16:00 (T9/055 Seminarraum)

Module: Current Issues in Cell Physiology (0262bB2.1)

Current topics in cell physiology

LV: 60100613

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4 SWS

No lecturers

Lab Seminar

Submod: 0262bB2.1.1

Akt: 02.03.2022 10:45

Description

Block course during the semester break. Next available class: tba (two weeks, all day)

Location: Charité Campus Benjamin Franklin (Steglitz, Hindenburgdamm 30), Institut für Klinische Physiologie

For further information: http://klinphys.charite.de/bioinfo/

or mail to Dorothee Günzel

Within this course you will generate structural models of proteins by homology modelling. You will develop hypotheses which amino acids should be decisive for the structure. These Hypotheses will be tested by carrying out molecular biologic experiments (such as site-directed mutagenesis by using two-step PCR). The construct will be cloned into expression vectors, transformed and amplified in bacteria, extracted, sequenced and overexpressed in cultured cells.

These cells will be analyzed in the confocal laser scanning microscope and by other techniques. The results will be evaluated and interpreted in the context of the original hypitheses.

The experimental part will be flanked by seminars introducing the theoretical background and the various techniques.

The exact program of this course depends on the actual research of the institute and is tightly connected to our actual projects.

References

Milatz S, Piontek J, Hempel C, Meoli L, Grohe C, Fromm A, Lee IM, El-Athman R, Günzel D (2017) Tight junction strand formation by claudin-10 isoforms and claudin-10a/-10b chimeras. Ann. N.Y. Acad. Sci. 1405: 102-115 (https://www.ncbi.nlm.nih.gov/pubmed/28633196)

Piontek J, Winkler L, Wolburg H, Müller SL, Zuleger N, Piehl C, Wiesner B, Krause G, Blasig IE (2008) Formation of tight junction: determinants of homophilic interaction between classic claudins. FASEB J. 22: 146-158 (https://www.ncbi.nlm.nih.gov/pubmed/17761522)

Additional information

Please bring lab coat, if available!

Additional appointments

Appointment series

Module: Angewandte Sequenzanalyse (0262bB2.2)

Applied Sequence Analysis

LV: 19400313

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4 SWS

Sandro Andreotti

Lab Seminar

Submod: 0262bB2.2.1

Akt: 02.03.2022 10:45

Fri, 12:00 - 16:00 (A6/SR 025/026 Seminarraum)

Fri, 12:00 - 16:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

Goals:

The students are able to use standard programs of sequence analysis independetly. They know various concepts and are able to use and program a chosen system. The students will be able to design new workflows and present the results graphically.

Additional appointments

Appointment series

A6/SR 025/026 Seminarraum

Sandro Andreotti

einmal, ab 22.04.2022, 12:00 - 16:00 (14 Termine)

A6/017 Frontalunterrichtsraum (Bioinf)

Sandro Andreotti

einmal, ab 22.04.2022, 12:00 - 16:00 (14 Termine)

Applied Machine Learning in Bioinformatics

LV: 19403613

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4 SWS

Tim Conrad

Lab Seminar

Submod: 0262bB2.2.1

Akt: 07.04.2022 18:00

Fri, 08:00 - 12:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Fri, 08:00 - 12:00 (T9/055 Seminarraum)

Description

Goals:

The students will be introduced to the basic statistical and algorithmic concepts in the field of Machine Learning, especially in the context of current research in bioinformatics, biology and biotechnology. They will work on several practical problems and implement / use the methods learned during the lectures to extract information from biological datasets in R. In particular, they will learn how to process data, choose the appropriate model to answer specific questions, evaluate and communicate the results. The students will be assigned weekly exercises which they have to complete. Presenting in turns the results from the exercises, in addition to a final oral exam, are prerequisites to pass the course.

Content:

Pre-processing of biological data and model implementation with R
Classification metrics and permutation approaches
Linear Models for Regression and Classification
Kernel Methods for Regression and Classification - Feature Selection
Semi-supervised learning / active learning
Classification trees and Random Forests
Graphical models

For further information see: http://www.molgen.mpg.de/3434810/Applied-Machine-Learning

Additional information

Prerequisites:

Attended the Statistics course from the Master in Bioinformatics FU (or equivalent)

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Tim Conrad

einmal, ab 22.04.2022, 08:00 - 12:00 (14 Termine)

T9/055 Seminarraum

Tim Conrad

einmal, ab 22.04.2022, 08:00 - 12:00 (14 Termine)

Module: Current Issues in Medical Genomics (0262bB2.6)

Applied Machine Learning in Bioinformatics

LV: 19403613

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4 SWS

Tim Conrad

Lab Seminar

Submod: 0262bB2.2.1

Akt: 07.04.2022 18:00

Fri, 08:00 - 12:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Fri, 08:00 - 12:00 (T9/055 Seminarraum)

Description

Goals:

Content:

Pre-processing of biological data and model implementation with R
Classification metrics and permutation approaches
Linear Models for Regression and Classification
Kernel Methods for Regression and Classification - Feature Selection
Semi-supervised learning / active learning
Classification trees and Random Forests
Graphical models

For further information see: http://www.molgen.mpg.de/3434810/Applied-Machine-Learning

Additional information

Prerequisites:

Attended the Statistics course from the Master in Bioinformatics FU (or equivalent)

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Tim Conrad

einmal, ab 22.04.2022, 08:00 - 12:00 (14 Termine)

T9/055 Seminarraum

Tim Conrad

einmal, ab 22.04.2022, 08:00 - 12:00 (14 Termine)

Module: Forschungsmodul A (0262bB3.1)

Journal Club Computational Biology

LV: 19402911

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 02.03.2022 10:45

Mon, 14:00 - 16:00 (T9/051 Seminarraum)

Description

Content:

In this seminar we will present original work in Computational biology as well as progress reports from PhD students. Master students will either be assigend a paper, or present their MSc thesis plans and results, or report about their "Fortgeschrittenenpraktikum". Credits are only awarded for the presentation of papers.

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/051 Seminarraum

Knut Reinert

einmal, ab 25.04.2022, 14:00 - 16:00 (12 Termine)

Computational Meta-Omics

LV: 19404811

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2 SWS

Thilo Muth

Seminar

Submod: 0262bB3.1.5

Akt: 07.04.2022 18:00

Thu, 08:00 - 10:00 (T9/049 Seminarraum)

Description

The growing interest in microbial communities is due to findings that demonstrate the influence of microorganisms on human health. For example, microbiome research investigates the role of intestinal microbiota in diseases such as diabetes and morbus

Crohn or health disorders such as food allergies and obesity. In this context, an imbalanced microbiome is associated with being the cause or the consequence of certain diseases or health disorders. In order to identify and quantify the microorganisms present in experimental samples, meta-omics analyses (e.g. metagenomics, metatranscriptomics, metaproteomics) are conducted that heavily rely on computational strategies from bioinformatics.

The main objectives of this seminar are (1) to introduce both computational and experimental meta-omics methods for analyzing single microbial and microbiome samples with a particular focus on metagenomics and metaproteomics, (2) to provide a general overview on the most commonly employed and recently proposed bioinformatics strategies in the field, and (3) to discuss the shortcomings of current meta-omics approaches in the context of microbiome research and diagnostics of bacteria and viruses.

Additional appointments

Appointment series

T9/049 Seminarraum

Thilo Muth

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

Machine Learning in Bioinformatics

LV: 19405701

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2 SWS

Philipp Florian Benner

Hugues Richard

Lecture

Submod: 0262bB3.1.1

Akt: 26.04.2022 12:00

Mon, 08:00 - 10:00 (T9/049 Seminarraum)

Description

The goal of this course is to introduce all major concepts of machine learning (classification and regression) with tutorials applying those concepts to typical problems in bioinformatics. We will introduce several machine learning models and highlight the assumptions behind techniques and their limitations in terms of model complexity, run-time, memory consumption. After this lecture, students will be able to select appropriate machine learning methods for solving typical problems in bioinformatics. They will gain sufficient knowledge to also implement and extend these methods on their own.

Contents:

-Benchmarking of machine learning models

-Naive Bayes

-Clustering and mixture models

-Hidden Markov Models

-Regression and Partial Least Squares

-Kernel Regression

-Support Vector Machines

-Neural Networks

-Regularization and Feature Selection

Additional appointments

Appointment series

T9/049 Seminarraum

Philipp Florian Benner

Hugues Richard

einmal, ab 25.04.2022, 08:00 - 10:00 (12 Termine)

Practice Seminar for Machine Learning in Bioinformatics

LV: 19405702

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2 SWS

Philipp Florian Benner

Hugues Richard

Kristin Vogel

Aleksander Karl Kister

Practice seminar

Submod: 0262bB3.1.3

Akt: 19.05.2022 14:00

Wed, 08:00 - 10:00 (T9/049 Seminarraum)

Large-scale phylogeny inference

LV: 19406111

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2 SWS

Prabhav Kalaghatgi

Seminar

Submod: 0262bB3.1.5

Akt: 13.05.2022 20:00

Tue, 14:00 - 16:00 (T9/049 Seminarraum)

Description

Description:

Advances in sequencing technology have made it possible to investigate the evolutionary dynamics of rapidly evolving pathogens such as SARS-CoV2 in unprecedented detail. Phylogeny inference is an essential step in evolutionary analysis. Thus techniques for large-scale phylogeny inference are needed if one is to study the evolution of tens of thousands of viral genomes. Students participating in this seminar will be introduced to topics such as

(i) Tree modification operations

(ii) Numerical optimization of hidden Markov models on trees

(ii) Topological correspondence between minimum spanning trees and phylogenetic trees

(iii) Evolutionary placement algorithm

Prior requirements:

Participation in the course "Phylogeny inference and applications", or any course dealing with combinatorial optimization is helpful but not necessary.

Additional appointments

T9/049 Seminarraum

Prabhav Kalaghatgi

12.07.2022 16:00 - 18:00

Appointment series

T9/049 Seminarraum

Prabhav Kalaghatgi

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

Resampling techniques and their application

LV: 60102501

a.SAP verarbeitet

2 SWS

Frank Konietschke

Lecture

Submod: 0262bB3.1.1

Akt: 02.03.2022 10:45

Wed, 14:00 - 16:00 (A6/SR 031 Seminarraum)

Description

In this course, we introduce resampling techniques for analyzing trials with small sample sizes. Special attention will be given to both estimation methods as well as inference procedures. We hereby will find answers to the questions (1) "How does resampling work?" and "When does resampling work"? Throughout the class we will study one sample, two samples and even factorial designs with independent and dependent observations. All algorithms will be presented and illustrated using R statistical software. Knowledge of fundamentals in statistical testing as well as basic skills in R are recommended and prerequisite.

Additional appointments

Appointment series

A6/SR 031 Seminarraum

Frank Konietschke

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

Practice Seminar for Resampling techniques and their application

LV: 60102502

a.SAP verarbeitet

2 SWS

Frank Konietschke

Practice seminar

Submod: 0262bB3.1.3

Akt: 02.03.2022 10:45

Wed, 16:00 - 18:00 (A6/SR 031 Seminarraum)

Complex Data Analysis in Physiology

LV: 60102701

a.SAP verarbeitet

2 SWS

No lecturers

Lecture

Submod: 0262bB3.1.1

Akt: 02.03.2022 10:45

Practice seminar for Complex Data Analysis in Physiology

LV: 60102702

a.SAP verarbeitet

2 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 02.03.2022 10:45

Module: Forschungsmodul B (0262bB3.2)

Journal Club Computational Biology

LV: 19402911

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 02.03.2022 10:45

Mon, 14:00 - 16:00 (T9/051 Seminarraum)

Description

Content:

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/051 Seminarraum

Knut Reinert

einmal, ab 25.04.2022, 14:00 - 16:00 (12 Termine)

Computational Meta-Omics

LV: 19404811

a.SAP verarbeitet

2 SWS

Thilo Muth

Seminar

Submod: 0262bB3.1.5

Akt: 07.04.2022 18:00

Thu, 08:00 - 10:00 (T9/049 Seminarraum)

Description

Additional appointments

Appointment series

T9/049 Seminarraum

Thilo Muth

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

Machine Learning in Bioinformatics

LV: 19405701

a.SAP verarbeitet

2 SWS

Philipp Florian Benner

Hugues Richard

Lecture

Submod: 0262bB3.1.1

Akt: 26.04.2022 12:00

Mon, 08:00 - 10:00 (T9/049 Seminarraum)

Description

Contents:

-Benchmarking of machine learning models

-Naive Bayes

-Clustering and mixture models

-Hidden Markov Models

-Regression and Partial Least Squares

-Kernel Regression

-Support Vector Machines

-Neural Networks

-Regularization and Feature Selection

Additional appointments

Appointment series

T9/049 Seminarraum

Philipp Florian Benner

Hugues Richard

einmal, ab 25.04.2022, 08:00 - 10:00 (12 Termine)

Practice Seminar for Machine Learning in Bioinformatics

LV: 19405702

a.SAP verarbeitet

2 SWS

Philipp Florian Benner

Hugues Richard

Kristin Vogel

Aleksander Karl Kister

Practice seminar

Submod: 0262bB3.1.3

Akt: 19.05.2022 14:00

Wed, 08:00 - 10:00 (T9/049 Seminarraum)

Large-scale phylogeny inference

LV: 19406111

a.SAP verarbeitet

2 SWS

Prabhav Kalaghatgi

Seminar

Submod: 0262bB3.1.5

Akt: 13.05.2022 20:00

Tue, 14:00 - 16:00 (T9/049 Seminarraum)

Description

Description:

(i) Tree modification operations

(ii) Numerical optimization of hidden Markov models on trees

(ii) Topological correspondence between minimum spanning trees and phylogenetic trees

(iii) Evolutionary placement algorithm

Prior requirements:

Participation in the course "Phylogeny inference and applications", or any course dealing with combinatorial optimization is helpful but not necessary.

Additional appointments

T9/049 Seminarraum

Prabhav Kalaghatgi

12.07.2022 16:00 - 18:00

Appointment series

T9/049 Seminarraum

Prabhav Kalaghatgi

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

Resampling techniques and their application

LV: 60102501

a.SAP verarbeitet

2 SWS

Frank Konietschke

Lecture

Submod: 0262bB3.1.1

Akt: 02.03.2022 10:45

Wed, 14:00 - 16:00 (A6/SR 031 Seminarraum)

Description

Additional appointments

Appointment series

A6/SR 031 Seminarraum

Frank Konietschke

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

Practice Seminar for Resampling techniques and their application

LV: 60102502

a.SAP verarbeitet

2 SWS

Frank Konietschke

Practice seminar

Submod: 0262bB3.1.3

Akt: 02.03.2022 10:45

Wed, 16:00 - 18:00 (A6/SR 031 Seminarraum)

Complex Data Analysis in Physiology

LV: 60102701

a.SAP verarbeitet

2 SWS

No lecturers

Lecture

Submod: 0262bB3.1.1

Akt: 02.03.2022 10:45

Practice seminar for Complex Data Analysis in Physiology

LV: 60102702

a.SAP verarbeitet

2 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 02.03.2022 10:45

Master Bioinformatik (SPO 2019) (0262c_MA120)

Module: Human Evolution (0262cD1.2)

V Human Evolution

LV: 23784a

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2 SWS

No lecturers

Lecture

Submod: 0262cD1.2.1

Akt: 14.04.2022 18:00

Description

The focus will be on molecular human evolution and include topics such as:
Comparison of humans to other primates at the level of genomes, transcriptomes, phenotypes, cognitive abilities Archaic humans, Neolithic revolution, Modern humans, Adaptation, Evolutionary medicine

Additional information

Please bring your laptop to the course!

Additional information for students

Course as part of the modul 'Computational Biology'

Additional appointments

Appointment series

S I Human Evolution

LV: 23784b

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1 SWS

No lecturers

Seminar

Submod: 0262cD1.2.2

Akt: 31.03.2022 18:00

S II Human Evolution

LV: 23784c

a.SAP verarbeitet

2 SWS

No lecturers

PC-based Seminar

Submod: 0262cD1.2.3

Akt: 31.03.2022 18:00

Module: Current topics in cell-physiology (0262cD1.4)

Current topics in cell physiology

LV: 60100613

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4 SWS

No lecturers

Lab Seminar

Submod: 0262bB2.1.1

Akt: 02.03.2022 10:45

Description

Block course during the semester break. Next available class: tba (two weeks, all day)

Location: Charité Campus Benjamin Franklin (Steglitz, Hindenburgdamm 30), Institut für Klinische Physiologie

For further information: http://klinphys.charite.de/bioinfo/

or mail to Dorothee Günzel

These cells will be analyzed in the confocal laser scanning microscope and by other techniques. The results will be evaluated and interpreted in the context of the original hypitheses.

The experimental part will be flanked by seminars introducing the theoretical background and the various techniques.

The exact program of this course depends on the actual research of the institute and is tightly connected to our actual projects.

References

Additional information

Please bring lab coat, if available!

Additional appointments

Appointment series

Module: Machine Learning in Bioinformatics (0262cD1.7)

Machine Learning in Bioinformatics

LV: 19405701

a.SAP verarbeitet

2 SWS

Philipp Florian Benner

Hugues Richard

Lecture

Submod: 0262bB3.1.1

Akt: 26.04.2022 12:00

Mon, 08:00 - 10:00 (T9/049 Seminarraum)

Description

Contents:

-Benchmarking of machine learning models

-Naive Bayes

-Clustering and mixture models

-Hidden Markov Models

-Regression and Partial Least Squares

-Kernel Regression

-Support Vector Machines

-Neural Networks

-Regularization and Feature Selection

Additional appointments

Appointment series

T9/049 Seminarraum

Philipp Florian Benner

Hugues Richard

einmal, ab 25.04.2022, 08:00 - 10:00 (12 Termine)

Practice Seminar for Machine Learning in Bioinformatics

LV: 19405702

a.SAP verarbeitet

2 SWS

Philipp Florian Benner

Hugues Richard

Kristin Vogel

Aleksander Karl Kister

Practice seminar

Submod: 0262bB3.1.3

Akt: 19.05.2022 14:00

Wed, 08:00 - 10:00 (T9/049 Seminarraum)

Module: Complex Data Analysis in Physiology (0262cD1.9)

Complex Data Analysis in Physiology

LV: 60102701

a.SAP verarbeitet

2 SWS

No lecturers

Lecture

Submod: 0262bB3.1.1

Akt: 02.03.2022 10:45

Practice seminar for Complex Data Analysis in Physiology

LV: 60102702

a.SAP verarbeitet

2 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 02.03.2022 10:45

Module: Advanced Biometrical Methods (0262cD1.11)

Resampling techniques and their application

LV: 60102501

a.SAP verarbeitet

2 SWS

Frank Konietschke

Lecture

Submod: 0262bB3.1.1

Akt: 02.03.2022 10:45

Wed, 14:00 - 16:00 (A6/SR 031 Seminarraum)

Description

Additional appointments

Appointment series

A6/SR 031 Seminarraum

Frank Konietschke

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

Practice Seminar for Resampling techniques and their application

LV: 60102502

a.SAP verarbeitet

2 SWS

Frank Konietschke

Practice seminar

Submod: 0262bB3.1.3

Akt: 02.03.2022 10:45

Wed, 16:00 - 18:00 (A6/SR 031 Seminarraum)

Module: Applied Machine Learning in Bioinformatics (0262cD1.12)

Applied Machine Learning in Bioinformatics

LV: 19403613

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4 SWS

Tim Conrad

Lab Seminar

Submod: 0262bB2.2.1

Akt: 07.04.2022 18:00

Fri, 08:00 - 12:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Fri, 08:00 - 12:00 (T9/055 Seminarraum)

Description

Goals:

Content:

Pre-processing of biological data and model implementation with R
Classification metrics and permutation approaches
Linear Models for Regression and Classification
Kernel Methods for Regression and Classification - Feature Selection
Semi-supervised learning / active learning
Classification trees and Random Forests
Graphical models

For further information see: http://www.molgen.mpg.de/3434810/Applied-Machine-Learning

Additional information

Prerequisites:

Attended the Statistics course from the Master in Bioinformatics FU (or equivalent)

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Tim Conrad

einmal, ab 22.04.2022, 08:00 - 12:00 (14 Termine)

T9/055 Seminarraum

Tim Conrad

einmal, ab 22.04.2022, 08:00 - 12:00 (14 Termine)

Module: Applied Sequence Analysis (0262cD1.18)

Applied Sequence Analysis

LV: 19400313

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4 SWS

Sandro Andreotti

Lab Seminar

Submod: 0262bB2.2.1

Akt: 02.03.2022 10:45

Fri, 12:00 - 16:00 (A6/SR 025/026 Seminarraum)

Fri, 12:00 - 16:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

Goals:

Additional appointments

Appointment series

A6/SR 025/026 Seminarraum

Sandro Andreotti

einmal, ab 22.04.2022, 12:00 - 16:00 (14 Termine)

A6/017 Frontalunterrichtsraum (Bioinf)

Sandro Andreotti

einmal, ab 22.04.2022, 12:00 - 16:00 (14 Termine)

Module: Current topics in medical genomics (0262cD1.20)

SARS-CoV-2 Bioinformatics & Data Science

LV: 19406213

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4 SWS

Max von Kleist

Lab Seminar

Submod: 0262cD1.20.1

Akt: 07.04.2022 18:00

Mon, 09:00 - 17:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

S. englische Seite

Additional appointments

Vorbesprechung

A6/SR 032 Seminarraum

Max von Kleist

15.07.2022 16:00 - 17:00

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Max von Kleist

einmal, ab 19.09.2022, 09:00 - 17:00 (10 Termine)

Module: Current research topics in Bioinformatics A (0262cD2.1)

Mathematical modeling of complex social systems

LV: 19245711

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2 SWS

Stefanie Winkelmann

Natasa Conrad

Sarah Wolf

Seminar

Submod: 0262cD2.1.1

Akt: 25.04.2022 10:00

Fri, 10:00 - 11:30 (KöLu24-26/SR 006 Neuro/Mathe)

Description

Many real-world processes can naturally be modeled by systems of interacting agents. Approaches reach from informal descriptions of interaction dynamics and their computational implementations to more formal, mathematical models. On the basis of recent journal publications, this seminar will focus on state-of-the art approaches and main challenges for the mathematical modeling of complex social systems. Example applications shall include: Epidemics spreading, opinion dynamics, processes in economic and socio-ecological systems.

The course will cover a selection of the following topics:

Dynamics on and of social networks
Agent-based models and their formulation by means of Markov processes (possibly with a connection to chemical reaction systems)
Population scaling and approximation by differential equations (ODEs, SDEs, PDEs…)
Numerical simulation techniques

References

Will be announced in the first session.

Additional information

The target group of this seminar are BMS students, Master students, and advanced bachelor students.

Prerequisites: Stochastics I-II (Stochastic processes) and Numerics I

Language: English

Additional appointments

Appointment series

KöLu24-26/SR 006 Neuro/Mathe

Stefanie Winkelmann

Natasa Conrad

Sarah Wolf

einmal, ab 22.04.2022, 10:00 - 11:30 (14 Termine)

Journal Club Computational Biology

LV: 19402911

a.SAP verarbeitet

2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 02.03.2022 10:45

Mon, 14:00 - 16:00 (T9/051 Seminarraum)

Description

Content:

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/051 Seminarraum

Knut Reinert

einmal, ab 25.04.2022, 14:00 - 16:00 (12 Termine)

Computational Meta-Omics

LV: 19404811

a.SAP verarbeitet

2 SWS

Thilo Muth

Seminar

Submod: 0262bB3.1.5

Akt: 07.04.2022 18:00

Thu, 08:00 - 10:00 (T9/049 Seminarraum)

Description

Additional appointments

Appointment series

T9/049 Seminarraum

Thilo Muth

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

Large-scale phylogeny inference

LV: 19406111

a.SAP verarbeitet

2 SWS

Prabhav Kalaghatgi

Seminar

Submod: 0262bB3.1.5

Akt: 13.05.2022 20:00

Tue, 14:00 - 16:00 (T9/049 Seminarraum)

Description

Description:

(i) Tree modification operations

(ii) Numerical optimization of hidden Markov models on trees

(ii) Topological correspondence between minimum spanning trees and phylogenetic trees

(iii) Evolutionary placement algorithm

Prior requirements:

Participation in the course "Phylogeny inference and applications", or any course dealing with combinatorial optimization is helpful but not necessary.

Additional appointments

T9/049 Seminarraum

Prabhav Kalaghatgi

12.07.2022 16:00 - 18:00

Appointment series

T9/049 Seminarraum

Prabhav Kalaghatgi

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

Module: Current research topics in Bioinformatics B (0262cD2.2)

Mathematical modeling of complex social systems

LV: 19245711

a.SAP verarbeitet

2 SWS

Stefanie Winkelmann

Natasa Conrad

Sarah Wolf

Seminar

Submod: 0262cD2.1.1

Akt: 25.04.2022 10:00

Fri, 10:00 - 11:30 (KöLu24-26/SR 006 Neuro/Mathe)

Description

The course will cover a selection of the following topics:

Dynamics on and of social networks
Agent-based models and their formulation by means of Markov processes (possibly with a connection to chemical reaction systems)
Population scaling and approximation by differential equations (ODEs, SDEs, PDEs…)
Numerical simulation techniques

References

Will be announced in the first session.

Additional information

The target group of this seminar are BMS students, Master students, and advanced bachelor students.

Prerequisites: Stochastics I-II (Stochastic processes) and Numerics I

Language: English

Additional appointments

Appointment series

KöLu24-26/SR 006 Neuro/Mathe

Stefanie Winkelmann

Natasa Conrad

Sarah Wolf

einmal, ab 22.04.2022, 10:00 - 11:30 (14 Termine)

Journal Club Computational Biology

LV: 19402911

a.SAP verarbeitet

2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 02.03.2022 10:45

Mon, 14:00 - 16:00 (T9/051 Seminarraum)

Description

Content:

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/051 Seminarraum

Knut Reinert

einmal, ab 25.04.2022, 14:00 - 16:00 (12 Termine)

Computational Meta-Omics

LV: 19404811

a.SAP verarbeitet

2 SWS

Thilo Muth

Seminar

Submod: 0262bB3.1.5

Akt: 07.04.2022 18:00

Thu, 08:00 - 10:00 (T9/049 Seminarraum)

Description

Additional appointments

Appointment series

T9/049 Seminarraum

Thilo Muth

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

Large-scale phylogeny inference

LV: 19406111

a.SAP verarbeitet

2 SWS

Prabhav Kalaghatgi

Seminar

Submod: 0262bB3.1.5

Akt: 13.05.2022 20:00

Tue, 14:00 - 16:00 (T9/049 Seminarraum)

Description

Description:

(i) Tree modification operations

(ii) Numerical optimization of hidden Markov models on trees

(ii) Topological correspondence between minimum spanning trees and phylogenetic trees

(iii) Evolutionary placement algorithm

Prior requirements:

Participation in the course "Phylogeny inference and applications", or any course dealing with combinatorial optimization is helpful but not necessary.

Additional appointments

T9/049 Seminarraum

Prabhav Kalaghatgi

12.07.2022 16:00 - 18:00

Appointment series

T9/049 Seminarraum

Prabhav Kalaghatgi

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

Module: Current research topics in Bioinformatics C (0262cD2.3)

Mathematical modeling of complex social systems

LV: 19245711

a.SAP verarbeitet

2 SWS

Stefanie Winkelmann

Natasa Conrad

Sarah Wolf

Seminar

Submod: 0262cD2.1.1

Akt: 25.04.2022 10:00

Fri, 10:00 - 11:30 (KöLu24-26/SR 006 Neuro/Mathe)

Description

The course will cover a selection of the following topics:

Dynamics on and of social networks
Agent-based models and their formulation by means of Markov processes (possibly with a connection to chemical reaction systems)
Population scaling and approximation by differential equations (ODEs, SDEs, PDEs…)
Numerical simulation techniques

References

Will be announced in the first session.

Additional information

The target group of this seminar are BMS students, Master students, and advanced bachelor students.

Prerequisites: Stochastics I-II (Stochastic processes) and Numerics I

Language: English

Additional appointments

Appointment series

KöLu24-26/SR 006 Neuro/Mathe

Stefanie Winkelmann

Natasa Conrad

Sarah Wolf

einmal, ab 22.04.2022, 10:00 - 11:30 (14 Termine)

Journal Club Computational Biology

LV: 19402911

a.SAP verarbeitet

2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 02.03.2022 10:45

Mon, 14:00 - 16:00 (T9/051 Seminarraum)

Description

Content:

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/051 Seminarraum

Knut Reinert

einmal, ab 25.04.2022, 14:00 - 16:00 (12 Termine)

Computational Meta-Omics

LV: 19404811

a.SAP verarbeitet

2 SWS

Thilo Muth

Seminar

Submod: 0262bB3.1.5

Akt: 07.04.2022 18:00

Thu, 08:00 - 10:00 (T9/049 Seminarraum)

Description

Additional appointments

Appointment series

T9/049 Seminarraum

Thilo Muth

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

Large-scale phylogeny inference

LV: 19406111

a.SAP verarbeitet

2 SWS

Prabhav Kalaghatgi

Seminar

Submod: 0262bB3.1.5

Akt: 13.05.2022 20:00

Tue, 14:00 - 16:00 (T9/049 Seminarraum)

Description

Description:

(i) Tree modification operations

(ii) Numerical optimization of hidden Markov models on trees

(ii) Topological correspondence between minimum spanning trees and phylogenetic trees

(iii) Evolutionary placement algorithm

Prior requirements:

Participation in the course "Phylogeny inference and applications", or any course dealing with combinatorial optimization is helpful but not necessary.

Additional appointments

T9/049 Seminarraum

Prabhav Kalaghatgi

12.07.2022 16:00 - 18:00

Appointment series

T9/049 Seminarraum

Prabhav Kalaghatgi

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

Module: Complex Systems in Bioinformatics (0262cB1.1)

Complex Systems in Bioinformatics

LV: 19405201

a.SAP verarbeitet

2 SWS

Heike Siebert

Martin Vingron

Jana Wolf

Lecture

Submod: 0262bB1.3.1

Akt: 21.04.2022 18:00

Tue, 12:00 - 14:00 (A7/SR 031)

Description

Content:

Topics from the following areas are considered in depth:

- Network structure analysis

- Graphical modeling

- Modeling of biochemical networks using standard differential equations

- Discrete modeling of regulatory networks

- Constraint-based modeling

- Stochastic and hybrid modeling

References

wird in der Veranstaltung bekanntgegeben.

Additional appointments

Appointment series

A7/SR 031

Heike Siebert

Martin Vingron

Jana Wolf

einmal, ab 19.04.2022, 12:00 - 14:00 (14 Termine)

Practice seminar for Complex Systems in Bioinformatics

LV: 19405202

a.SAP verarbeitet

2 SWS

Heike Siebert

Martin Vingron

Jana Wolf

Practice seminar

Submod: 0262bB1.3.2

Akt: 21.04.2022 18:00

Thu, 10:00 - 12:00 (A7/SR 031)

Seminar for Complex Systems in Bioinformatics

LV: 19405211

a.SAP verarbeitet

2 SWS

Heike Siebert

Martin Vingron

Jana Wolf

Seminar

Submod: 0262bB1.3.3

Akt: 21.04.2022 18:00

Thu, 12:00 - 14:00 (A7/SR 031)

Module: Research Internship (0262cB1.4)

Bioinformatics Research Internship

LV: 19400432

a.SAP verarbeitet

0 SWS

No lecturers

Research Internship

Submod: 0262bA1.6.1

Akt: 02.03.2022 10:45

Module: Data Science in the Life Sciences (0590aB2.1)

Data Science in the Life Sciences

LV: 19405606

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4 SWS

Katharina Jahn

Seminar-style instruction

Submod: 0590aB2.1.1

Akt: 31.03.2022 18:00

Mon, 10:00 - 14:00 (T9/SR 005 Übungsraum)

Description

This course offers an introduction to various types of data and analysis techniques which are typically used in the life sciences (e.g. omics technologies). The goal is to get a deeper understanding of advanced concepts and data analytical methods in the area of life sciences.

The focus will be on the following topics:

* acquisition and pre-processing of data from the area of life sciences,
* explorative analysis techniques,
* concepts and tools for reproducible research,
* theory and practice of methods and models for the analysis of data from the life sciences (statistical inference, regression models, methods of machine learning),
* introduction to methods of big data analysis.

After successful completion of this course, participants are able to evaluate, plan and conduct investigations in the life sciences using common methods.

Additional appointments

Appointment series

T9/SR 005 Übungsraum

Katharina Jahn

einmal, ab 25.04.2022, 10:00 - 14:00 (12 Termine)

Projectseminar for Data Science in the Life Sciences

LV: 19405612

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4 SWS

Katharina Jahn

Project Seminar

Submod: 0590aB2.1.2

Akt: 31.03.2022 18:00

Wed, 10:00 - 14:00 (KöLu24-26/SR 006 Neuro/Mathe)

Module: Data Science in Life Sciences (0590bB1.1)

Data Science in the Life Sciences

LV: 19405606

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4 SWS

Katharina Jahn

Seminar-style instruction

Submod: 0590aB2.1.1

Akt: 31.03.2022 18:00

Mon, 10:00 - 14:00 (T9/SR 005 Übungsraum)

Description

The focus will be on the following topics:

After successful completion of this course, participants are able to evaluate, plan and conduct investigations in the life sciences using common methods.

Additional appointments

Appointment series

T9/SR 005 Übungsraum

Katharina Jahn

einmal, ab 25.04.2022, 10:00 - 14:00 (12 Termine)

Projectseminar for Data Science in the Life Sciences

LV: 19405612

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4 SWS

Katharina Jahn

Project Seminar

Submod: 0590aB2.1.2

Akt: 31.03.2022 18:00

Wed, 10:00 - 14:00 (KöLu24-26/SR 006 Neuro/Mathe)

Module: Advanced Algorithms for Bioinformatics (0262cB3.1)

Advanced Algorithms in Bioinformatics

LV: 19405301

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2 SWS

Knut Reinert

Lecture

Submod: 0262bB1.5.1

Akt: 02.03.2022 10:45

Tue, 10:00 - 12:00 (A3/ 024 Seminarraum )

Description

Goals:

Some examples of subjects that will be more deeply discussed:

Paradigms for approximative, semiglobal alignments (read mapping)
Methods for genomic assembly and metagenomic assembly
Methods for the identification of genetic variants (SNVs, SNPs, CNVs) - algorithmic problems of quantifying expession using NGS data

For further information go to: https://mycampus.imp.fu-berlin.de/portal

Additional appointments

Appointment series

A3/ 024 Seminarraum

Knut Reinert

einmal, ab 19.04.2022, 10:00 - 12:00 (14 Termine)

Practice seminar for Advanced Algorithms in Bioinformatics

LV: 19405302

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2 SWS

Knut Reinert

Practice seminar

Submod: 0262bB1.5.2

Akt: 19.04.2022 18:00

Tue, 08:00 - 10:00 (A3/ 024 Seminarraum )

Seminar for Advanced Algorithms in Bioinformatics

LV: 19405311

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB1.5.3

Akt: 02.03.2022 10:45

Thu, 14:00 - 16:00 (T9/055 Seminarraum)

General Professional Skills

General Professional Skills for Bioinformatics (0261a_m30)

Module: Legal Aspects of Computer Science (0159cA2.4)

Basics of Data Protection Law

LV: 19307201

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2 SWS

Philip Scholz

Lecture

Submod: 0159cA2.4.1

Akt: 16.03.2022 16:00

Wed, 16:00 - 18:00 (T9/055 Seminarraum)

Description

Content

The lecture is to provide the students with a first structured overview of the German and European Data Protection Law based on the EU General Data Protection Regulation (GDPR). Furthermore, current topics on data protection are being discussed in depth.

Overview of the topics

Historiy of data protection and privacy
European and constitutional legal background
Legislative framework: General Data Protection Regulation, Federal Data Protection Act, sector-specific data protection law
Basic concepts and scope (e.g. personal data)
Principles relating to processing of personal data and lawfulness of processing (e.g. consent)
Rights of the data subject (e.g. right of access, right to be forgotten)
Data protection by design and by default, security of processing, data protection impact assessment
Enforcement of data protection law: supervisory system, sanctions
Focal points: big data, profiling, social networks, smart video surveillance, processing in the context of employment

References

Material:

Konferenz der Datenschutzbeauftragten des Bundes und der Länder, Kurzpapiere zur Datenschutz-Grundverordnung, https://www.lfd.niedersachsen.de/startseite/dsgvo/anwendung_dsgvo_kurzpapiere
DatSchR: Datenschutzrecht, Gesetzestexte, 12. Auflage, Beck-Text im dtv 2020.

Literaturhinweise:

P. Schantz/H.A. Wolff, Das neue Datenschutzrecht – Datenschutz-Grundverordnung und Bundesdatenschutzgesetz in der Praxis, C.H. Beck 2017
Laue/Kremer, Das neue Datenschutzrecht in der betrieblichen Praxis, Handbuch, Nomos 2. Aufl. 2019
Kühling/Klar/Sackmann, Datenschutzrecht, Lehrbuch/Studienliteratur, C.F. Müller 4. Aufl. 2018
S. Jandt/R. Steidle, Datenschutz im Internet, Rechtshandbuch zu DSGVO und BDSG, Nomos 2018
A. Roßnagel (Hrsg.), Das neue Datenschutzrecht – Europäische Datenschutz-Grundverordnung und deutsche Datenschutzgesetze, Nomos 2018
S. Simitis/G. Hornung/I. Spiecker gen. Döhmann (Hrsg.), Datenschutzrecht: DSGVO mit BDSG, Großkommentar, Nomos 2019
J. Kühling / B. Buchner, Datenschutz-Grundverordnung, Bundesdatenschutzgsetz: DSGVO/BDSG, Kommentar, C.H. Beck 2. Auflage 2018
Th. Hoeren, Internetrecht (Skript, Stand März 2018), 6. Kapitel: Datenschutzrecht, Universität Münster (http://www.uni-muenster.de/Jura.itm/hoeren/lehre/materialien/materialien-zum-internetrecht)

Additional information

The exact date will be announced.

Additional appointments

Appointment series

T9/055 Seminarraum

Philip Scholz

einmal, ab 20.04.2022, 16:00 - 18:00 (14 Termine)

Practice seminar for Data Privacy

LV: 19307202

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2 SWS

Philip Scholz

Practice seminar

Submod: 0159cA2.4.2

Akt: 19.04.2022 18:00

Wed, 18:00 - 19:00 (T9/051 Seminarraum)

Module: Planning, Implementing and Analysing a Tutorial in Computer Science (0159cA2.5)

Planning, Realisation and Analysis of a Tutorial

LV: 19302613

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2 SWS

No lecturers

Lab Seminar

Submod: 0159cA2.5.1

Akt: 13.04.2022 16:00

Module: System Administration (0159cA2.7)

System Administration

LV: 19302201

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2 SWS

Rolf Dietze

Lecture

Submod: 0159cA2.7.1

Akt: 06.04.2022 15:33

Mon, 10:00 - 18:00 (T9/055 Seminarraum)

Description

shell scripting from the viewpoint of system administration
planning and setting up a computer system while taking availability and maintainability into consideration (RAS-conditions)
redundancy in networking and storage
planning and setting up a redundant storage system (Raid-technologies and management)
system administration, security and user management, accounting and logging
managing configuration files and documentation
backups - strategies and technologies
planning and realization of networkwide services and resources (e.g. file services, print services, network information services)
implementation on different platforms (AIX, Solaris)
partitioning, virtualization and resource management on modern systems supporting logical partitioning
virtualization and resource management at the operating systems level (workload partitions, zones, jails)
qualitative comparison of partitioning and virtualization techniques on PowerPC and Sparc based UNI*-systems.
delegation of administration tasks with rolebased access (RBAC)
ethical and legal aspects when dealing with administrative privileges,
special aspects and procedures when dealing with personal information and security clearances when dealing with vital systems

At the beginning of the class, we will refresh the necessary knowledge to participate in the practical exercises and we will set up a working environment in the context of the administration of a heterogeneous computer network. Previous experience is desirable.

Additional information

The class will be taught as a block course. Details will be announced in due time.

Additional appointments

Appointment series

T9/055 Seminarraum

Rolf Dietze

einmal, ab 01.08.2022, 10:00 - 18:00 (15 Termine)

Internship for System Administration

LV: 19302230

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3 SWS

No lecturers

Internship

Submod: 0159cA2.7.2

Akt: 06.04.2022 15:33

Module: General Professional Skills III (subject-related) (5 CP) (0261aA1.23)

Women in the History of Mathematics and Computer Science

LV: 19213510

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2 SWS

Anina Mischau

Undergraduate Course

Submod: 0261aA1.23.1

Akt: 29.03.2022 16:00

Tue, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Description

Im Zentrum des Seminars steht die Erarbeitung und Wiederentdeckung der Lebensgeschichten und des Wirken einiger bedeutender Mathematikerinnen und Informatikerinnen im 19. und 20. Jahrhundert. Betrachtet werden z.B. das Leben und Werk von Sophie Germaine (1776-1831), Ada Lovelace (1815-1852), Sonja Kovalevskaya (1850-1891), Emmy Noether (1882-1935), Ruth Moufang (1905-1977), Grace Murray Hopper (1906-1992) und weiterer Wissenschaftlerinnen.

Im Seminar geht es nicht darum, diese Frauen als Ausnahmeerscheinung hervorzuheben, denn dies würde sie lediglich auf ihren Exotinnenstatus festschreiben. Es geht vielmehr um eine historische Kontextualisierung deren Leben und Werk. Dies ermöglicht nicht nur eine exemplarische Auseinandersetzung mit gesellschaftlichen wie fachkulturellen Inklusions- und Exklusionsprozessen entlang der Kategorie Geschlecht, sondern auch die Entwicklung neuer Sichtweisen auf die tradierte Kulturgeschichte beider Disziplinen. Das Seminar basiert auf dem Ansatz eines forschenden oder entdeckenden Lernens, d.h. die Studierenden werden selbständig in Gruppenarbeiten einzelne Seminarthemen vorbereiten und präsentieren. Diese Präsentationen werden dann im Seminar diskutiert. Durch den Einsatz von Beobachtungsbögen soll zudem eine Feedbackkultur erprobt werden, die im späteren Berufsalltag im Umgang mit Schüler*innen und/oder Kolleg*innen hilfreich ist.

Additional information

Vorbehaltlich der Pandemielage wird das Proseminar in Präsenz, online oder im Wechsel Präsenz/online stattfinden.

Additional appointments

Frauen in der Geschichte der Mathematik und Informatik

A6/SR 031 Seminarraum

Anina Mischau

24.05.2022 14:00 - 18:00

Appointment series

A6/SR 031 Seminarraum

Anina Mischau

einmal, ab 19.04.2022, 14:00 - 18:00 (8 Termine)

Women in the History of Mathematics and Computer Science

LV: 19234810

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2 SWS

Anina Mischau

Undergraduate Course

Submod: 0261aA1.23.1

Akt: 30.03.2022 18:00

Tue, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Description

The seminar focuses on the development and rediscovery of the life stories and the work of some important mathematicians and computer scientists in the 19th and 20th centuries. The life and work of Sophie Germaine (1776-1831), Ada Lovelace (1815-1852), Sonja Kovalevskaya (1850-1891), Emmy Noether (1882-1935), Ruth Moufang (1905-1977), Grace Murray Hopper (1906-1992) and other female scientists are examined.

The seminar is not about highlighting these women as an exception, because it would only set them on their exotic status. Rather, it is about a historical contextualization of their life and work. This not only enables an exemplary examination of social and cultural inclusion and exclusion processes along the gender category, but also the development of new perspectives on the traditional cultural history of both disciplines. The seminar is based on the approach of researching or discovering learning, i.e. the students will independently prepare and present individual seminar topics in group work. These presentations will then be discussed in the seminar. Through the use of observation sheets, a feedback culture is also to be tested that will be helpful in dealing with pupils and/or colleagues in later professional life.

Additional information

For mathematicians and computer scientists in a monobachelor's degree, creditable as ABV!

Additional appointments

Appointment series

A6/SR 031 Seminarraum

Anina Mischau

einmal, ab 19.04.2022, 14:00 - 18:00 (9 Termine)

Module: Berufspraktikum (0261aA2.1)

Bioinformatics Internship

LV: 19402433

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0 SWS

No lecturers

Professional Internship

Submod: 0261aA2.1.1

Akt: 31.03.2022 20:00

Module: Principles of Business Management (GPS) (0105cA4.1)

Betriebswirtschaftliche Grundlagen (ABV)

LV: 10120611

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4 SWS

Janina Sundermeier

Catharina Werner

Seminar

Submod: 0105cA4.1.1

Akt: 11.03.2022 10:00

Tue, 10:00 - 12:00 (Hs 105 Hörsaal)

Tue, 12:00 - 14:00 (Hs 103 Hörsaal)

Tue, 14:00 - 16:00 (Hs 103 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional information

Bitte beachten Sie, dass dieses Modul aus zwei Komponenten besteht:

1. Plenumsveranstaltung (Dienstag 10.00-12.00Uhr): Diese Veranstaltung findet in der Gesamtgruppe statt.

2. Übungen (Di 12.00-14.00Uhr oder 14.00-16.00Uhr): Für diese Veranstaltung können Sie sich einen der beiden zuvor genannten Zeitslots aussuchen. Für die Wahl wird in der ersten Plenumsveranstaltung ein Wahlzettel ausgehändigt.

Additional appointments

Appointment series

Hs 105 Hörsaal

Janina Sundermeier

Catharina Werner

einmal, ab 19.04.2022, 10:00 - 12:00 (14 Termine)

Hs 103 Hörsaal

Janina Sundermeier

Catharina Werner

einmal, ab 19.04.2022, 12:00 - 14:00 (14 Termine)

Hs 103 Hörsaal

Janina Sundermeier

Catharina Werner

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

Module: Principles of Marketing (GPS) (0105cA4.2)

Marketing-Grundlagen (ABV)

LV: 10130711

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4 SWS

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

Seminar

Submod: 0105cA4.2.1

Akt: 02.03.2022 10:45

Fri, 10:00 - 12:00 (Online - zeitUNabhängig)

Mon, 12:00 - 14:00 (Online - zeitUNabhängig)

Mon, 08:00 - 10:00 (Online - zeitUNabhängig)

Mon, 10:00 - 12:00 (Online - zeitUNabhängig)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 22.04.2022, 10:00 - 12:00 (14 Termine)

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 25.04.2022, 12:00 - 14:00 (12 Termine)

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 25.04.2022, 08:00 - 10:00 (12 Termine)

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 25.04.2022, 10:00 - 12:00 (12 Termine)

Module: E-Business (GPS) (0105cA4.3)

E-Business (ABV)

LV: 10131011

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4 SWS

Martin Gersch

Catharina Werner

Natalie Mahlert

Seminar

Submod: 0105cA4.3.1

Akt: 02.03.2022 10:45

Wed, 14:00 - 18:00 (Hs 104a Hörsaal)

Module: French GPS introductory Module (0105dA1.15)

Französisch ABV Einstiegsmodul (2)

LV: 0105dA1.15.2.S22.001

a.In Planung

4 SWS

No lecturers

Language Course

Submod: 0105dA1.15.2

Akt: 20.01.2022 08:59

Module: Italian GPS Introductory Module (0105dA1.22)

Italienisch ABV Einstiegsmodul (1)

LV: 0105dA1.22.1.S22.001

a.In Planung

4 SWS

No lecturers

Language Course

Submod: 0105dA1.22.1

Akt: 20.12.2021 11:39

Module: Russian GPS Introductory Module (0105dA1.43)

Russisch ABV Einstiegsmodul (1)

LV: 0105dA1.43.1.S22.001

a.In Planung

4 SWS

No lecturers

Language Course

Submod: 0105dA1.43.1

Akt: 22.12.2021 08:47

Russisch ABV Einstiegsmodul (1)

LV: 0105dA1.43.1.S22.002

a.In Planung

4 SWS

No lecturers

Language Course

Submod: 0105dA1.43.1

Akt: 22.12.2021 08:47

Module: Turkish GPS Introductory Module (0105dA1.56)

Türkisch ABV Einstiegsmodul (2)

LV: 0105dA1.56.2.S22.001

a.In Planung

4 SWS

No lecturers

Language Course

Submod: 0105dA1.56.2

Akt: 17.12.2021 10:47

Module: Principles of Business Management (GPS) (0105dA4.1)

Betriebswirtschaftliche Grundlagen (ABV)

LV: 10120611

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4 SWS

Janina Sundermeier

Catharina Werner

Seminar

Submod: 0105cA4.1.1

Akt: 11.03.2022 10:00

Tue, 10:00 - 12:00 (Hs 105 Hörsaal)

Tue, 12:00 - 14:00 (Hs 103 Hörsaal)

Tue, 14:00 - 16:00 (Hs 103 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional information

Bitte beachten Sie, dass dieses Modul aus zwei Komponenten besteht:

1. Plenumsveranstaltung (Dienstag 10.00-12.00Uhr): Diese Veranstaltung findet in der Gesamtgruppe statt.

Additional appointments

Appointment series

Hs 105 Hörsaal

Janina Sundermeier

Catharina Werner

einmal, ab 19.04.2022, 10:00 - 12:00 (14 Termine)

Hs 103 Hörsaal

Janina Sundermeier

Catharina Werner

einmal, ab 19.04.2022, 12:00 - 14:00 (14 Termine)

Hs 103 Hörsaal

Janina Sundermeier

Catharina Werner

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

Module: Principles of Marketing (0105dA4.2)

Marketing-Grundlagen (ABV)

LV: 10130711

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4 SWS

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

Seminar

Submod: 0105cA4.2.1

Akt: 02.03.2022 10:45

Fri, 10:00 - 12:00 (Online - zeitUNabhängig)

Mon, 12:00 - 14:00 (Online - zeitUNabhängig)

Mon, 08:00 - 10:00 (Online - zeitUNabhängig)

Mon, 10:00 - 12:00 (Online - zeitUNabhängig)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 22.04.2022, 10:00 - 12:00 (14 Termine)

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 25.04.2022, 12:00 - 14:00 (12 Termine)

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 25.04.2022, 08:00 - 10:00 (12 Termine)

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 25.04.2022, 10:00 - 12:00 (12 Termine)

Module: E-Business (GCC) (0105dA4.3)

E-Business (ABV)

LV: 10131011

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4 SWS

Martin Gersch

Catharina Werner

Natalie Mahlert

Seminar

Submod: 0105cA4.3.1

Akt: 02.03.2022 10:45

Wed, 14:00 - 18:00 (Hs 104a Hörsaal)

Module: Funpreneur - Launch of a Student Company (0105dA4.6)

Funpreneur competition

LV: 10123312

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2 SWS

Janina Sundermeier

Natalie Mahlert

Project Seminar

Submod: 0105dA4.6.1

Akt: 14.03.2022 10:00

Mon, 12:00 - 16:00 (Hs 102 Hörsaal)

ABV Bioinformatik (für Studierende, die nach der BSc STO/PO 2012 studieren) (0261b_m30)

Module: French GPS introductory Module (0105dA1.15)

Französisch ABV Einstiegsmodul (2)

LV: 0105dA1.15.2.S22.001

a.In Planung

4 SWS

No lecturers

Language Course

Submod: 0105dA1.15.2

Akt: 20.01.2022 08:59

Module: Italian GPS Introductory Module (0105dA1.22)

Italienisch ABV Einstiegsmodul (1)

LV: 0105dA1.22.1.S22.001

a.In Planung

4 SWS

No lecturers

Language Course

Submod: 0105dA1.22.1

Akt: 20.12.2021 11:39

Module: Russian GPS Introductory Module (0105dA1.43)

Russisch ABV Einstiegsmodul (1)

LV: 0105dA1.43.1.S22.001

a.In Planung

4 SWS

No lecturers

Language Course

Submod: 0105dA1.43.1

Akt: 22.12.2021 08:47

Russisch ABV Einstiegsmodul (1)

LV: 0105dA1.43.1.S22.002

a.In Planung

4 SWS

No lecturers

Language Course

Submod: 0105dA1.43.1

Akt: 22.12.2021 08:47

Module: Turkish GPS Introductory Module (0105dA1.56)

Türkisch ABV Einstiegsmodul (2)

LV: 0105dA1.56.2.S22.001

a.In Planung

4 SWS

No lecturers

Language Course

Submod: 0105dA1.56.2

Akt: 17.12.2021 10:47

Module: Principles of Business Management (GPS) (0105dA4.1)

Betriebswirtschaftliche Grundlagen (ABV)

LV: 10120611

a.SAP verarbeitet

4 SWS

Janina Sundermeier

Catharina Werner

Seminar

Submod: 0105cA4.1.1

Akt: 11.03.2022 10:00

Tue, 10:00 - 12:00 (Hs 105 Hörsaal)

Tue, 12:00 - 14:00 (Hs 103 Hörsaal)

Tue, 14:00 - 16:00 (Hs 103 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional information

Bitte beachten Sie, dass dieses Modul aus zwei Komponenten besteht:

1. Plenumsveranstaltung (Dienstag 10.00-12.00Uhr): Diese Veranstaltung findet in der Gesamtgruppe statt.

Additional appointments

Appointment series

Hs 105 Hörsaal

Janina Sundermeier

Catharina Werner

einmal, ab 19.04.2022, 10:00 - 12:00 (14 Termine)

Hs 103 Hörsaal

Janina Sundermeier

Catharina Werner

einmal, ab 19.04.2022, 12:00 - 14:00 (14 Termine)

Hs 103 Hörsaal

Janina Sundermeier

Catharina Werner

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

Module: Principles of Marketing (0105dA4.2)

Marketing-Grundlagen (ABV)

LV: 10130711

a.SAP verarbeitet

4 SWS

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

Seminar

Submod: 0105cA4.2.1

Akt: 02.03.2022 10:45

Fri, 10:00 - 12:00 (Online - zeitUNabhängig)

Mon, 12:00 - 14:00 (Online - zeitUNabhängig)

Mon, 08:00 - 10:00 (Online - zeitUNabhängig)

Mon, 10:00 - 12:00 (Online - zeitUNabhängig)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 22.04.2022, 10:00 - 12:00 (14 Termine)

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 25.04.2022, 12:00 - 14:00 (12 Termine)

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 25.04.2022, 08:00 - 10:00 (12 Termine)

Online - zeitUNabhängig

Gunnar Mau

Katharina-Maria Fonferek

Manuel Schild

einmal, ab 25.04.2022, 10:00 - 12:00 (12 Termine)

Module: E-Business (GCC) (0105dA4.3)

E-Business (ABV)

LV: 10131011

a.SAP verarbeitet

4 SWS

Martin Gersch

Catharina Werner

Natalie Mahlert

Seminar

Submod: 0105cA4.3.1

Akt: 02.03.2022 10:45

Wed, 14:00 - 18:00 (Hs 104a Hörsaal)

Module: Funpreneur - Launch of a Student Company (0105dA4.6)

Funpreneur competition

LV: 10123312

a.SAP verarbeitet

2 SWS

Janina Sundermeier

Natalie Mahlert

Project Seminar

Submod: 0105dA4.6.1

Akt: 14.03.2022 10:00

Mon, 12:00 - 16:00 (Hs 102 Hörsaal)

Module: Project Management in the Software Area (0261bA1.1)

Seminar for Software Project Management (Single-cell transcriptomics)

LV: 19402511

a.SAP verarbeitet

1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 31.03.2022 20:00

Software Project Management (Single-cell transcriptomics)

LV: 19402513

a.SAP verarbeitet

4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 31.03.2022 20:00

Seminar for Software Project Management (OpenMS)

LV: 19403411

a.SAP verarbeitet

1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 02.03.2022 10:45

Software Project Management (OpenMS)

LV: 19403413

a.SAP verarbeitet

4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 02.03.2022 10:45

Seminar for Software Project Management (Workflows)

LV: 19404311

a.SAP verarbeitet

1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 02.03.2022 10:45

Software Project Management (Workflows)

LV: 19404313

a.SAP verarbeitet

4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 02.03.2022 10:45

Seminar zu Projektmanagement im Softwarebereich (AI for Health)

LV: 60102811

a.SAP verarbeitet

1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 31.03.2022 20:00

Projektmanagement im Softwarebereich (AI for Health)

LV: 60102813

a.SAP verarbeitet

4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 31.03.2022 20:00

Seminar zu Projektmanagement im Softwarebereich (Bioinformatische Aufklärung monogener Krankheiten)

LV: 60102911

a.SAP verarbeitet

1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 02.03.2022 10:45

Projektmanagement im Softwarebereich (Bioinformatische Aufklärung monogener Krankheiten)

LV: 60102913

a.SAP verarbeitet

4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 02.03.2022 10:45

Module: Legal Aspects of Computer Science (0159cA2.4)

Basics of Data Protection Law

LV: 19307201

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2 SWS

Philip Scholz

Lecture

Submod: 0159cA2.4.1

Akt: 16.03.2022 16:00

Wed, 16:00 - 18:00 (T9/055 Seminarraum)

Description

Content

Overview of the topics

Historiy of data protection and privacy
European and constitutional legal background
Legislative framework: General Data Protection Regulation, Federal Data Protection Act, sector-specific data protection law
Basic concepts and scope (e.g. personal data)
Principles relating to processing of personal data and lawfulness of processing (e.g. consent)
Rights of the data subject (e.g. right of access, right to be forgotten)
Data protection by design and by default, security of processing, data protection impact assessment
Enforcement of data protection law: supervisory system, sanctions
Focal points: big data, profiling, social networks, smart video surveillance, processing in the context of employment

References

Material:

Konferenz der Datenschutzbeauftragten des Bundes und der Länder, Kurzpapiere zur Datenschutz-Grundverordnung, https://www.lfd.niedersachsen.de/startseite/dsgvo/anwendung_dsgvo_kurzpapiere
DatSchR: Datenschutzrecht, Gesetzestexte, 12. Auflage, Beck-Text im dtv 2020.

Literaturhinweise:

P. Schantz/H.A. Wolff, Das neue Datenschutzrecht – Datenschutz-Grundverordnung und Bundesdatenschutzgesetz in der Praxis, C.H. Beck 2017
Laue/Kremer, Das neue Datenschutzrecht in der betrieblichen Praxis, Handbuch, Nomos 2. Aufl. 2019
Kühling/Klar/Sackmann, Datenschutzrecht, Lehrbuch/Studienliteratur, C.F. Müller 4. Aufl. 2018
S. Jandt/R. Steidle, Datenschutz im Internet, Rechtshandbuch zu DSGVO und BDSG, Nomos 2018
A. Roßnagel (Hrsg.), Das neue Datenschutzrecht – Europäische Datenschutz-Grundverordnung und deutsche Datenschutzgesetze, Nomos 2018
S. Simitis/G. Hornung/I. Spiecker gen. Döhmann (Hrsg.), Datenschutzrecht: DSGVO mit BDSG, Großkommentar, Nomos 2019
J. Kühling / B. Buchner, Datenschutz-Grundverordnung, Bundesdatenschutzgsetz: DSGVO/BDSG, Kommentar, C.H. Beck 2. Auflage 2018
Th. Hoeren, Internetrecht (Skript, Stand März 2018), 6. Kapitel: Datenschutzrecht, Universität Münster (http://www.uni-muenster.de/Jura.itm/hoeren/lehre/materialien/materialien-zum-internetrecht)

Additional information

The exact date will be announced.

Additional appointments

Appointment series

T9/055 Seminarraum

Philip Scholz

einmal, ab 20.04.2022, 16:00 - 18:00 (14 Termine)

Practice seminar for Data Privacy

LV: 19307202

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2 SWS

Philip Scholz

Practice seminar

Submod: 0159cA2.4.2

Akt: 19.04.2022 18:00

Wed, 18:00 - 19:00 (T9/051 Seminarraum)

Module: Planning, Implementing and Analysing a Tutorial in Computer Science (0159cA2.5)

Planning, Realisation and Analysis of a Tutorial

LV: 19302613

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2 SWS

No lecturers

Lab Seminar

Submod: 0159cA2.5.1

Akt: 13.04.2022 16:00

Module: System Administration (0159cA2.7)

System Administration

LV: 19302201

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2 SWS

Rolf Dietze

Lecture

Submod: 0159cA2.7.1

Akt: 06.04.2022 15:33

Mon, 10:00 - 18:00 (T9/055 Seminarraum)

Description

shell scripting from the viewpoint of system administration
planning and setting up a computer system while taking availability and maintainability into consideration (RAS-conditions)
redundancy in networking and storage
planning and setting up a redundant storage system (Raid-technologies and management)
system administration, security and user management, accounting and logging
managing configuration files and documentation
backups - strategies and technologies
planning and realization of networkwide services and resources (e.g. file services, print services, network information services)
implementation on different platforms (AIX, Solaris)
partitioning, virtualization and resource management on modern systems supporting logical partitioning
virtualization and resource management at the operating systems level (workload partitions, zones, jails)
qualitative comparison of partitioning and virtualization techniques on PowerPC and Sparc based UNI*-systems.
delegation of administration tasks with rolebased access (RBAC)
ethical and legal aspects when dealing with administrative privileges,
special aspects and procedures when dealing with personal information and security clearances when dealing with vital systems

Additional information

The class will be taught as a block course. Details will be announced in due time.

Additional appointments

Appointment series

T9/055 Seminarraum

Rolf Dietze

einmal, ab 01.08.2022, 10:00 - 18:00 (15 Termine)

Internship for System Administration

LV: 19302230

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3 SWS

No lecturers

Internship

Submod: 0159cA2.7.2

Akt: 06.04.2022 15:33

Module: General Professional Skills III (subject-related) (5 CP) (0261bA2.10)

Women in the History of Mathematics and Computer Science

LV: 19213510

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2 SWS

Anina Mischau

Undergraduate Course

Submod: 0261aA1.23.1

Akt: 29.03.2022 16:00

Tue, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Description

Additional information

Vorbehaltlich der Pandemielage wird das Proseminar in Präsenz, online oder im Wechsel Präsenz/online stattfinden.

Additional appointments

Frauen in der Geschichte der Mathematik und Informatik

A6/SR 031 Seminarraum

Anina Mischau

24.05.2022 14:00 - 18:00

Appointment series

A6/SR 031 Seminarraum

Anina Mischau

einmal, ab 19.04.2022, 14:00 - 18:00 (8 Termine)

Women in the History of Mathematics and Computer Science

LV: 19234810

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2 SWS

Anina Mischau

Undergraduate Course

Submod: 0261aA1.23.1

Akt: 30.03.2022 18:00

Tue, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Description

Additional information

For mathematicians and computer scientists in a monobachelor's degree, creditable as ABV!

Additional appointments

Appointment series

A6/SR 031 Seminarraum

Anina Mischau

einmal, ab 19.04.2022, 14:00 - 18:00 (9 Termine)

Module: Professional Internship (0261bA3.1)

Bioinformatics Internship

LV: 19402433

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0 SWS

No lecturers

Professional Internship

Submod: 0261aA2.1.1

Akt: 31.03.2022 20:00

Gesamtes Lehrangebot der Bioinformatik

Gesamtes Lehrangebot der Bioinformatik (E61a)

Module: Gesamtes Lehrangebot der Bioinformatik (E61aA1.1)

Graduation Ceremony

LV: 19000170

a.Publiziert

0 SWS

Knut Reinert

Begrüßungs- und Abschlussveranstaltung

Submod: E61aA1.1.1

Akt: 28.02.2022 15:03

Welcome for Undergraduate Students of Computer Sciences

LV: 19000370

a.Publiziert

0 SWS

No lecturers

Begrüßungs- und Abschlussveranstaltung

Submod: E61aA1.1.1

Akt: 28.02.2022 15:02

Tue, 08:00 - 10:00 (T9/Gr. Hörsaal)

Mentoring

LV: 19000546

a.Publiziert

0 SWS

Ulrike Seyferth

Mentoring

Submod: E61aA1.1.1

Akt: 29.04.2022 19:05

Description

The mentoring program offers events and counseling services primarily (but not only!) for first-year students. All offers are voluntary and are based on your needs and wishes!

If you have questions or wishes, please contact us!

Your mentors in mathematics, computer science and bioinformatics

Additional appointments

Mentoring - Python

T9/SR 006 Seminarraum

Ulrike Seyferth

25.04.2022 16:00 - 18:00

Beweistechniken

A6/SR 031 Seminarraum

Ulrike Seyferth

09.05.2022 09:00 - 12:00

Berufspraktikum Bioinformatik

A6/SR 025/026 Seminarraum

Ulrike Seyferth

17.05.2022 13:00 - 14:00

Appointment series

Computer-oriented Mathematics II

LV: 19211901

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2 SWS

Christof Schütte

Lecture

Submod: 0260bA2.4.1

Akt: 02.03.2022 10:45

Fri, 12:00 - 14:00 (T9/Gr. Hörsaal)

Description

Inhalt:

Die Auswahl der behandelten numerischen Verfahren enthält Polynominterpolation, Newton-Cotes-Formeln zur numerische Integration und Euler-Verfahren für lineare Differentialgleichungen.

Additional information

Studierende der Mathematik (Monobachelor und Lehramt) und Bioinformatik, sowie Numerikinteressierte aus Physik, Informatik und anderen Natur- und Geisteswissenschaften.

Additional appointments

Appointment series

T9/Gr. Hörsaal

Christof Schütte

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

Practice seminar for Computer-oriented Mathematics II

LV: 19211902

a.SAP verarbeitet

2 SWS

Christof Schütte

Practice seminar

Submod: 0260bA2.4.2

Akt: 27.04.2022 11:26

Mon, 08:00 - 10:00 (A6/SR 009 Seminarraum)

Thu, 12:00 - 14:00 (A7/SR 140 Seminarraum (Hinterhaus))

Mon, 10:00 - 12:00 (A7/SR 140 Seminarraum (Hinterhaus))

Thu, 08:00 - 10:00 (A7/SR 140 Seminarraum (Hinterhaus))

Wed, 14:00 - 16:00 (A6/SR 009 Seminarraum)

Wed, 14:00 - 16:00 (A7/SR 031)

Fri, 08:00 - 10:00 (A6/SR 009 Seminarraum)

Tue, 16:00 - 18:00 (A6/SR 009 Seminarraum)

Fri, 14:00 - 16:00 (A6/SR 009 Seminarraum)

Additional appointments

Appointment series

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 25.04.2022, 08:00 - 10:00 (12 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Christof Schütte

einmal, ab 21.04.2022, 12:00 - 14:00 (13 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Christof Schütte

einmal, ab 25.04.2022, 10:00 - 12:00 (12 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Christof Schütte

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

A7/SR 031

Christof Schütte

einmal, ab 04.05.2022, 14:00 - 16:00 (12 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 22.04.2022, 08:00 - 10:00 (14 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 19.04.2022, 16:00 - 18:00 (14 Termine)

A6/SR 009 Seminarraum

Christof Schütte

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

Women in the History of Mathematics and Computer Science

LV: 19213510

a.SAP verarbeitet

2 SWS

Anina Mischau

Undergraduate Course

Submod: 0261aA1.23.1

Akt: 29.03.2022 16:00

Tue, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Description

Additional information

Vorbehaltlich der Pandemielage wird das Proseminar in Präsenz, online oder im Wechsel Präsenz/online stattfinden.

Additional appointments

Frauen in der Geschichte der Mathematik und Informatik

A6/SR 031 Seminarraum

Anina Mischau

24.05.2022 14:00 - 18:00

Appointment series

A6/SR 031 Seminarraum

Anina Mischau

einmal, ab 19.04.2022, 14:00 - 18:00 (8 Termine)

Women in the History of Mathematics and Computer Science

LV: 19234810

a.SAP verarbeitet

2 SWS

Anina Mischau

Undergraduate Course

Submod: 0261aA1.23.1

Akt: 30.03.2022 18:00

Tue, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Description

Additional information

For mathematicians and computer scientists in a monobachelor's degree, creditable as ABV!

Additional appointments

Appointment series

A6/SR 031 Seminarraum

Anina Mischau

einmal, ab 19.04.2022, 14:00 - 18:00 (9 Termine)

Mathematical modeling of complex social systems

LV: 19245711

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2 SWS

Stefanie Winkelmann

Natasa Conrad

Sarah Wolf

Seminar

Submod: 0262cD2.1.1

Akt: 25.04.2022 10:00

Fri, 10:00 - 11:30 (KöLu24-26/SR 006 Neuro/Mathe)

Description

The course will cover a selection of the following topics:

Dynamics on and of social networks
Agent-based models and their formulation by means of Markov processes (possibly with a connection to chemical reaction systems)
Population scaling and approximation by differential equations (ODEs, SDEs, PDEs…)
Numerical simulation techniques

References

Will be announced in the first session.

Additional information

The target group of this seminar are BMS students, Master students, and advanced bachelor students.

Prerequisites: Stochastics I-II (Stochastic processes) and Numerics I

Language: English

Additional appointments

Appointment series

KöLu24-26/SR 006 Neuro/Mathe

Stefanie Winkelmann

Natasa Conrad

Sarah Wolf

einmal, ab 22.04.2022, 10:00 - 11:30 (14 Termine)

Foundations of Theoretical Computer Science

LV: 19301201

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3 SWS

Wolfgang Mulzer

Lecture

Submod: 0086bA3.1.1

Akt: 06.05.2022 16:00

Wed, 10:00 - 12:00 (T9/Gr. Hörsaal)

Mon, 10:00 - 12:00 (T9/Gr. Hörsaal)

Description

Uwe Schöning, Theoretische Informatik kurzgefasst, 5. Auflage, Spektrum Akademischer Verlag, 2008
John E. Hopcroft, Rajeev Motwani, Jeffrey D. Ullman, Einführung in die Automatentheorie, Formale Sprachen und Komplexität, Pearson Studium, 3. Auflage, 2011
Ingo Wegener: Theoretische Informatik - Eine algorithmenorientierte Einführung, 2. Auflage, Teubner, 1999
Michael Sipser, Introduction to the Theory of Computation, 2nd ed., Thomson Course Technology, 2006
Wegener, Kompendium theoretische Informatik - Eine Ideensammlung, Teubner 1996

Additional appointments

Klausur

Hs 1a Hörsaal

Hs 1b Hörsaal

Hs 2 Hörsaal

Wolfgang Mulzer

27.07.2022 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Wolfgang Mulzer

einmal, ab 20.04.2022, 10:00 - 12:00 (13 Termine)

T9/Gr. Hörsaal

Wolfgang Mulzer

einmal, ab 25.04.2022, 10:00 - 12:00 (12 Termine)

Practice seminar for Foundations of Theoretical Computer Science

LV: 19301202

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2 SWS

Wolfgang Mulzer

Practice seminar

Submod: 0086bA3.1.2

Akt: 20.05.2022 12:00

Wed, 08:00 - 10:00 (T9/051 Seminarraum)

Tue, 14:00 - 16:00 (T9/SR 006 Seminarraum)

Wed, 14:00 - 16:00 (T9/046 Seminarraum)

Mon, 12:00 - 14:00 (T9/053 Seminarraum)

Thu, 16:00 - 18:00 (T9/051 Seminarraum)

Thu, 14:00 - 16:00 (T9/049 Seminarraum)

Wed, 16:00 - 18:00 (T9/049 Seminarraum)

Tue, 16:00 - 18:00 (T9/051 Seminarraum)

Fri, 14:00 - 16:00 (T9/SR 006 Seminarraum)

Tue, 08:00 - 10:00 (T9/053 Seminarraum)

Additional appointments

Appointment series

T9/051 Seminarraum

Wolfgang Mulzer

einmal, ab 20.04.2022, 08:00 - 10:00 (14 Termine)

T9/SR 006 Seminarraum

Wolfgang Mulzer

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

T9/046 Seminarraum

Wolfgang Mulzer

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

T9/053 Seminarraum

Wolfgang Mulzer

einmal, ab 25.04.2022, 12:00 - 14:00 (12 Termine)

T9/051 Seminarraum

Wolfgang Mulzer

einmal, ab 21.04.2022, 16:00 - 18:00 (13 Termine)

T9/049 Seminarraum

Wolfgang Mulzer

einmal, ab 21.04.2022, 14:00 - 16:00 (13 Termine)

T9/049 Seminarraum

Wolfgang Mulzer

einmal, ab 20.04.2022, 16:00 - 18:00 (14 Termine)

T9/051 Seminarraum

Wolfgang Mulzer

einmal, ab 19.04.2022, 16:00 - 18:00 (14 Termine)

T9/SR 006 Seminarraum

Wolfgang Mulzer

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

T9/053 Seminarraum

Wolfgang Mulzer

einmal, ab 19.04.2022, 08:00 - 10:00 (14 Termine)

Database Systems

LV: 19301501

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3 SWS

Agnès Voisard

Lecture

Submod: 0086bA3.3.1

Akt: 19.04.2022 12:32

Tue, 14:00 - 16:00 (Gr. Hörsaal (Raum B.001))

Tue, 14:00 - 16:00 (T9/Gr. Hörsaal)

Thu, 14:00 - 16:00 (T9/Gr. Hörsaal)

Description

Content

Project: the topics are deepened in an implementation project for student groups.

References

Alfons Kemper, Andre Eickler: Datenbanksysteme - Eine Einführung, 5. Auflage, Oldenbourg 2004
R. Elmasri, S. Navathe: Grundlagen von Datenbanksystemen, Pearson Studium, 2005

Additional information

Requirements

ALP 1 - Functional Programming
ALP 2 - Object-oriented Programming
ALP 3 - Data structures and data abstractions
OR Informatik B

Additional appointments

Appointment series

Gr. Hörsaal (Raum B.001)

Agnès Voisard

einmal, ab 12.07.2022, 14:00 - 16:00 (2 Termine)

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 21.04.2022, 14:00 - 16:00 (13 Termine)

Practice seminar for Database systems

LV: 19301502

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2 SWS

Agnès Voisard

Muhammed-Ugur Karagülle

Practice seminar

Submod: 0086bA3.3.2

Akt: 19.04.2022 18:00

Fri, 16:00 - 18:00 (T9/055 Seminarraum)

Wed, 10:00 - 12:00 (T9/046 Seminarraum)

Thu, 10:00 - 12:00 (T9/055 Seminarraum)

Fri, 14:00 - 16:00 (T9/046 Seminarraum)

Wed, 14:00 - 16:00 (T9/049 Seminarraum)

Thu, 10:00 - 12:00 (T9/046 Seminarraum)

Fri, 16:00 - 18:00 (T9/SR 005 Übungsraum)

Fri, 12:00 - 14:00 (A3/SR 120)

Fri, 14:00 - 16:00 (T9/055 Seminarraum)

Fri, 12:00 - 14:00 (T9/055 Seminarraum)

Additional appointments

Appointment series

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 16:00 - 18:00 (14 Termine)

T9/046 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 20.04.2022, 10:00 - 12:00 (14 Termine)

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 21.04.2022, 10:00 - 12:00 (13 Termine)

T9/046 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

T9/049 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

T9/046 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 21.04.2022, 10:00 - 12:00 (13 Termine)

T9/SR 005 Übungsraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 16:00 - 18:00 (14 Termine)

A3/SR 120

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

T9/055 Seminarraum

Agnès Voisard

Muhammed-Ugur Karagülle

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

Computer Science B

LV: 19302101

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4 SWS

Katharina Klost

Lecture

Submod: 0260cA1.2.1

Akt: 27.04.2022 11:32

Wed, 08:00 - 10:00 (T9/Gr. Hörsaal)

Fri, 08:00 - 10:00 (T9/Gr. Hörsaal)

Description

The class focuses on:

Fundations of programming: imperative and object-oriented programming
Algorithms and data structures: design and implementation of data structures
theory of algorithms

We use C++ as an implementation language.

Target Audience

Students with Computer Science as a minor concentration and students of bioinformatics.

References

Goodrich, Tamassia: Data Structures and Algorithms in C++
Stroustrup: Die C++ Programmiersprache
Cormen, Leiserson, Rivest, Stein: Introduction to Algorithms
Kleinberg, Tardos: Algorithm Design
Schöning: Algorithmen - kurz gefasst

Additional appointments

Klausur

Gr. Hörsaal (Raum B.001)

Katharina Klost

26.07.2022 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Katharina Klost

einmal, ab 20.04.2022, 08:00 - 10:00 (14 Termine)

T9/Gr. Hörsaal

Katharina Klost

einmal, ab 22.04.2022, 08:00 - 10:00 (14 Termine)

Practice seminar for Computer Science B

LV: 19302102

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2 SWS

Katharina Klost

Practice seminar

Submod: 0260cA1.2.2

Akt: 19.04.2022 18:00

Wed, 12:00 - 14:00 (A7/SR 031)

Thu, 08:00 - 10:00 (T9/053 Seminarraum)

Thu, 12:00 - 14:00 (T9/051 Seminarraum)

Thu, 10:00 - 12:00 (T9/053 Seminarraum)

Tue, 12:00 - 14:00 (T9/046 Seminarraum)

Fri, 12:00 - 14:00 (T9/046 Seminarraum)

Fri, 10:00 - 12:00 (T9/SR 005 Übungsraum)

Tue, 12:00 - 14:00 (A6/SR 007/008 Seminarraum)

Additional appointments

Appointment series

A7/SR 031

Katharina Klost

einmal, ab 20.04.2022, 12:00 - 14:00 (14 Termine)

T9/053 Seminarraum

Katharina Klost

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

T9/051 Seminarraum

Katharina Klost

einmal, ab 21.04.2022, 12:00 - 14:00 (13 Termine)

T9/053 Seminarraum

Katharina Klost

einmal, ab 21.04.2022, 10:00 - 12:00 (13 Termine)

T9/046 Seminarraum

Katharina Klost

einmal, ab 19.04.2022, 12:00 - 14:00 (14 Termine)

T9/046 Seminarraum

Katharina Klost

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

T9/SR 005 Übungsraum

Katharina Klost

einmal, ab 22.04.2022, 10:00 - 12:00 (14 Termine)

A6/SR 007/008 Seminarraum

Katharina Klost

einmal, ab 19.04.2022, 12:00 - 14:00 (14 Termine)

Applied Sequence Analysis

LV: 19400313

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4 SWS

Sandro Andreotti

Lab Seminar

Submod: 0262bB2.2.1

Akt: 02.03.2022 10:45

Fri, 12:00 - 16:00 (A6/SR 025/026 Seminarraum)

Fri, 12:00 - 16:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

Goals:

Additional appointments

Appointment series

A6/SR 025/026 Seminarraum

Sandro Andreotti

einmal, ab 22.04.2022, 12:00 - 16:00 (14 Termine)

A6/017 Frontalunterrichtsraum (Bioinf)

Sandro Andreotti

einmal, ab 22.04.2022, 12:00 - 16:00 (14 Termine)

Bioinformatics Research Internship

LV: 19400432

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0 SWS

No lecturers

Research Internship

Submod: 0262bA1.6.1

Akt: 02.03.2022 10:45

Mathematics for Bioinformaticians II

LV: 19402201

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4 SWS

Heike Siebert

Lecture

Submod: 0260cA2.2.1

Akt: 04.05.2022 12:00

Tue, 14:00 - 16:00 (A3/Hs 001 Hörsaal)

Wed, 10:00 - 12:00 (A3/Hs 001 Hörsaal)

Description

number systems: from natural numbers to real numbers, completeness property of the reals
polynomials: roots of polynomials, polynomial interpolation, rational functions
special functions: exponential function, logarithm, trigonometric functions
complex numbers: exponential function for complex numbers, complex roots
convergence of sequences and series, convergence of functions, continuous functions
differential calculus: derivative of a function, interpretations and applications of the derivative
intergral calculus: definite and indefinite integrals, fundamental theorem of calculus, applications
power series
Taylor series
basics of differential calculus for multivariate functions: partial derivative, gradient, Jacobi matrix
solution of simple differential equations

References

Kurt Meyberg, Peter Vachenauer: Höhere Mathematik 1, Springer-Verlag, 6.Auflage 2001
Dirk Hachenberger: Mathematik für Informatiker, Pearson 2005
Gerhard Berendt: Mathematische Grundlagen der Informatik, Band 2, B.I.-Wissenschaftsverlag; 1990
Thomas Westermann: Mathematik für Ingenieure mit Maple 1, Springer-Verlag, 4.Auflage 2005

Additional information

Target group:

Students of Bioinformatics (BSc, second semester)

Requirements:

Mathematik für Bioinformatiker I

Additional appointments

Appointment series

A3/Hs 001 Hörsaal

Heike Siebert

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

A3/Hs 001 Hörsaal

Heike Siebert

einmal, ab 20.04.2022, 10:00 - 12:00 (14 Termine)

Practice seminar for Mathematics for Bioinformaticians II

LV: 19402202

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2 SWS

Heike Siebert

Practice seminar

Submod: 0260cA2.2.2

Akt: 19.04.2022 18:00

Wed, 14:00 - 16:00 (A3/SR 120)

Fri, 12:00 - 14:00 (A6/SR 031 Seminarraum)

Fri, 14:00 - 16:00 (T9/049 Seminarraum)

Thu, 08:00 - 10:00 (T9/046 Seminarraum)

Additional appointments

Appointment series

A3/SR 120

Heike Siebert

einmal, ab 20.04.2022, 14:00 - 16:00 (14 Termine)

A6/SR 031 Seminarraum

Heike Siebert

einmal, ab 22.04.2022, 12:00 - 14:00 (14 Termine)

T9/049 Seminarraum

Heike Siebert

einmal, ab 22.04.2022, 14:00 - 16:00 (14 Termine)

T9/046 Seminarraum

Heike Siebert

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

Bioinformatics Internship

LV: 19402433

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0 SWS

No lecturers

Professional Internship

Submod: 0261aA2.1.1

Akt: 31.03.2022 20:00

Seminar for Software Project Management (Single-cell transcriptomics)

LV: 19402511

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1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 31.03.2022 20:00

Software Project Management (Single-cell transcriptomics)

LV: 19402513

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4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 31.03.2022 20:00

Journal Club Computational Biology

LV: 19402911

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 02.03.2022 10:45

Mon, 14:00 - 16:00 (T9/051 Seminarraum)

Description

Content:

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/051 Seminarraum

Knut Reinert

einmal, ab 25.04.2022, 14:00 - 16:00 (12 Termine)

Seminar for Software Project Management (OpenMS)

LV: 19403411

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1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 02.03.2022 10:45

Software Project Management (OpenMS)

LV: 19403413

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4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 02.03.2022 10:45

Applied Machine Learning in Bioinformatics

LV: 19403613

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4 SWS

Tim Conrad

Lab Seminar

Submod: 0262bB2.2.1

Akt: 07.04.2022 18:00

Fri, 08:00 - 12:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Fri, 08:00 - 12:00 (T9/055 Seminarraum)

Description

Goals:

Content:

Pre-processing of biological data and model implementation with R
Classification metrics and permutation approaches
Linear Models for Regression and Classification
Kernel Methods for Regression and Classification - Feature Selection
Semi-supervised learning / active learning
Classification trees and Random Forests
Graphical models

For further information see: http://www.molgen.mpg.de/3434810/Applied-Machine-Learning

Additional information

Prerequisites:

Attended the Statistics course from the Master in Bioinformatics FU (or equivalent)

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Tim Conrad

einmal, ab 22.04.2022, 08:00 - 12:00 (14 Termine)

T9/055 Seminarraum

Tim Conrad

einmal, ab 22.04.2022, 08:00 - 12:00 (14 Termine)

Seminar for Software Project Management (Workflows)

LV: 19404311

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1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 02.03.2022 10:45

Software Project Management (Workflows)

LV: 19404313

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4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 02.03.2022 10:45

Computational Meta-Omics

LV: 19404811

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2 SWS

Thilo Muth

Seminar

Submod: 0262bB3.1.5

Akt: 07.04.2022 18:00

Thu, 08:00 - 10:00 (T9/049 Seminarraum)

Description

Additional appointments

Appointment series

T9/049 Seminarraum

Thilo Muth

einmal, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

Complex Systems in Bioinformatics

LV: 19405201

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2 SWS

Heike Siebert

Martin Vingron

Jana Wolf

Lecture

Submod: 0262bB1.3.1

Akt: 21.04.2022 18:00

Tue, 12:00 - 14:00 (A7/SR 031)

Description

Content:

Topics from the following areas are considered in depth:

- Network structure analysis

- Graphical modeling

- Modeling of biochemical networks using standard differential equations

- Discrete modeling of regulatory networks

- Constraint-based modeling

- Stochastic and hybrid modeling

References

wird in der Veranstaltung bekanntgegeben.

Additional appointments

Appointment series

A7/SR 031

Heike Siebert

Martin Vingron

Jana Wolf

einmal, ab 19.04.2022, 12:00 - 14:00 (14 Termine)

Practice seminar for Complex Systems in Bioinformatics

LV: 19405202

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2 SWS

Heike Siebert

Martin Vingron

Jana Wolf

Practice seminar

Submod: 0262bB1.3.2

Akt: 21.04.2022 18:00

Thu, 10:00 - 12:00 (A7/SR 031)

Seminar for Complex Systems in Bioinformatics

LV: 19405211

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2 SWS

Heike Siebert

Martin Vingron

Jana Wolf

Seminar

Submod: 0262bB1.3.3

Akt: 21.04.2022 18:00

Thu, 12:00 - 14:00 (A7/SR 031)

Advanced Algorithms in Bioinformatics

LV: 19405301

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2 SWS

Knut Reinert

Lecture

Submod: 0262bB1.5.1

Akt: 02.03.2022 10:45

Tue, 10:00 - 12:00 (A3/ 024 Seminarraum )

Description

Goals:

Some examples of subjects that will be more deeply discussed:

Paradigms for approximative, semiglobal alignments (read mapping)
Methods for genomic assembly and metagenomic assembly
Methods for the identification of genetic variants (SNVs, SNPs, CNVs) - algorithmic problems of quantifying expession using NGS data

For further information go to: https://mycampus.imp.fu-berlin.de/portal

Additional appointments

Appointment series

A3/ 024 Seminarraum

Knut Reinert

einmal, ab 19.04.2022, 10:00 - 12:00 (14 Termine)

Practice seminar for Advanced Algorithms in Bioinformatics

LV: 19405302

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2 SWS

Knut Reinert

Practice seminar

Submod: 0262bB1.5.2

Akt: 19.04.2022 18:00

Tue, 08:00 - 10:00 (A3/ 024 Seminarraum )

Seminar for Advanced Algorithms in Bioinformatics

LV: 19405311

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB1.5.3

Akt: 02.03.2022 10:45

Thu, 14:00 - 16:00 (T9/055 Seminarraum)

Data Science in the Life Sciences

LV: 19405606

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4 SWS

Katharina Jahn

Seminar-style instruction

Submod: 0590aB2.1.1

Akt: 31.03.2022 18:00

Mon, 10:00 - 14:00 (T9/SR 005 Übungsraum)

Description

The focus will be on the following topics:

After successful completion of this course, participants are able to evaluate, plan and conduct investigations in the life sciences using common methods.

Additional appointments

Appointment series

T9/SR 005 Übungsraum

Katharina Jahn

einmal, ab 25.04.2022, 10:00 - 14:00 (12 Termine)

Projectseminar for Data Science in the Life Sciences

LV: 19405612

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4 SWS

Katharina Jahn

Project Seminar

Submod: 0590aB2.1.2

Akt: 31.03.2022 18:00

Wed, 10:00 - 14:00 (KöLu24-26/SR 006 Neuro/Mathe)

Machine Learning in Bioinformatics

LV: 19405701

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2 SWS

Philipp Florian Benner

Hugues Richard

Lecture

Submod: 0262bB3.1.1

Akt: 26.04.2022 12:00

Mon, 08:00 - 10:00 (T9/049 Seminarraum)

Description

Contents:

-Benchmarking of machine learning models

-Naive Bayes

-Clustering and mixture models

-Hidden Markov Models

-Regression and Partial Least Squares

-Kernel Regression

-Support Vector Machines

-Neural Networks

-Regularization and Feature Selection

Additional appointments

Appointment series

T9/049 Seminarraum

Philipp Florian Benner

Hugues Richard

einmal, ab 25.04.2022, 08:00 - 10:00 (12 Termine)

Practice Seminar for Machine Learning in Bioinformatics

LV: 19405702

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2 SWS

Philipp Florian Benner

Hugues Richard

Kristin Vogel

Aleksander Karl Kister

Practice seminar

Submod: 0262bB3.1.3

Akt: 19.05.2022 14:00

Wed, 08:00 - 10:00 (T9/049 Seminarraum)

Bioinformatics

LV: 19406001

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2 SWS

Florian Klimm

Lecture

Submod: E61aA1.1.1

Akt: 06.05.2022 18:00

Thu, 08:00 - 10:00 (A6/SR 007/008 Seminarraum)

Description

See German description.

Additional appointments

Klausur

A3/Hs 001 Hörsaal

Florian Klimm

27.07.2022 11:00 - 13:00

Nachklausur

Florian Klimm

28.09.2022 11:00 - 13:00

Appointment series

A6/SR 007/008 Seminarraum

Florian Klimm

wöchentlich, ab 21.04.2022, 08:00 - 10:00 (13 Termine)

Practice seminar Bioinformatics

LV: 19406002

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2 SWS

Florian Klimm

Practice seminar

Submod: E61aA1.1.1

Akt: 29.04.2022 14:00

Mon, 16:00 - 18:00 (T9/051 Seminarraum)

Wed, 08:00 - 10:00 (A6/SR 007/008 Seminarraum)

Description

In der Übung werden die Vorlesungsinhalte aus der Vorlesung 21609a vertieft.

Additional appointments

Appointment series

T9/051 Seminarraum

Florian Klimm

wöchentlich, ab 25.04.2022, 16:00 - 18:00 (12 Termine)

A6/SR 007/008 Seminarraum

Florian Klimm

wöchentlich, ab 27.04.2022, 08:00 - 10:00 (13 Termine)

Large-scale phylogeny inference

LV: 19406111

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2 SWS

Prabhav Kalaghatgi

Seminar

Submod: 0262bB3.1.5

Akt: 13.05.2022 20:00

Tue, 14:00 - 16:00 (T9/049 Seminarraum)

Description

Description:

(i) Tree modification operations

(ii) Numerical optimization of hidden Markov models on trees

(ii) Topological correspondence between minimum spanning trees and phylogenetic trees

(iii) Evolutionary placement algorithm

Prior requirements:

Participation in the course "Phylogeny inference and applications", or any course dealing with combinatorial optimization is helpful but not necessary.

Additional appointments

T9/049 Seminarraum

Prabhav Kalaghatgi

12.07.2022 16:00 - 18:00

Appointment series

T9/049 Seminarraum

Prabhav Kalaghatgi

einmal, ab 19.04.2022, 14:00 - 16:00 (14 Termine)

SARS-CoV-2 Bioinformatics & Data Science

LV: 19406213

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4 SWS

Max von Kleist

Lab Seminar

Submod: 0262cD1.20.1

Akt: 07.04.2022 18:00

Mon, 09:00 - 17:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

S. englische Seite

Additional appointments

Vorbesprechung

A6/SR 032 Seminarraum

Max von Kleist

15.07.2022 16:00 - 17:00

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Max von Kleist

einmal, ab 19.09.2022, 09:00 - 17:00 (10 Termine)

Biochemie I - Grundlagen der Biochemie

LV: 21601a

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2 SWS

Markus Wahl

Florian Heyd

Helge Ewers

Lecture

Submod: 0260cA3.3.1

Akt: 02.03.2022 10:44

Wed, 12:00 - 14:00 (Hs Anorganik)