Evento

Bachelor's programme in Bioinformatics

Bachelor's programme in Bioinformatics (2010 study regulations) (0260b_k150)

Module: Computerorientierte Mathematik II (0260bA2.4)

Computer-oriented Mathematics II

LV: 19211901

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2 SWS

Carsten Gräser

Lecture

Submod: 0260bA2.4.1

Akt: 11.06.2019 12:00

Fri, 12:00 - 14:00 (T9/Gr. Hörsaal)

Description

Inhalt:

Die Auswahl der behandelten numerischen Verfahren enthält Polynominterpolation, Newton-Cotes-Formeln zur numerische Integration und Euler-Verfahren für lineare Differentialgleichungen.

Additional information

Studierende der Mathematik (Monobachelor und Lehramt) und Bioinformatik, sowie Numerikinteressierte aus Physik, Informatik und anderen Natur- und Geisteswissenschaften.

Additional appointments

Klausur

Hs 1a Hörsaal

Carsten Gräser

12.07.2019 12:00 - 15:00

Nachklausur

HFB/B Hörsaal

Carsten Gräser

30.09.2019 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Carsten Gräser

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

Practice seminar for Computer-oriented Mathematics II

LV: 19211902

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2 SWS

Xingjian Zhang-Schneider

Carsten Gräser

Practice seminar

Submod: 0260bA2.4.2

Akt: 15.08.2019 12:00

Tue, 12:00 - 14:00 (A6/SR 009 Seminarraum)

Thu, 10:00 - 12:00 (A3/SR 130 Seminarraum (Hinterhaus))

Tue, 12:00 - 14:00 (A6/SR 025/026 Seminarraum)

Thu, 12:00 - 14:00 (A6/SR 009 Seminarraum)

Thu, 10:00 - 12:00 (KöLu24-26/SR 006 Neuro/Mathe)

Thu, 12:00 - 14:00 (A7/SR 140 Seminarraum (Hinterhaus))

Tue, 12:00 - 14:00 (A3/SR 130 Seminarraum (Hinterhaus))

Tue, 12:00 - 14:00 (A3/SR 119)

Additional information

Studierende der Mathematik (Monobachelor und Lehramt) und Bioinformatik, sowie Numerikinteressierte aus Physik, Informatik und anderen Natur- und Geisteswissenschaften.

Additional appointments

Appointment series

A6/SR 009 Seminarraum

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

A3/SR 130 Seminarraum (Hinterhaus)

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 10:00 - 12:00 (13 Termine)

A6/SR 025/026 Seminarraum

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

A6/SR 009 Seminarraum

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 12:00 - 14:00 (13 Termine)

KöLu24-26/SR 006 Neuro/Mathe

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 10:00 - 12:00 (13 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 12:00 - 14:00 (13 Termine)

A3/SR 130 Seminarraum (Hinterhaus)

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

A3/SR 119

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

Module: Fundamentals of Theoretical Computer Science (0086bA3.1)

Foundations of Theoretical Computer Science

LV: 19301201

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3 SWS

Klaus Kriegel

Lecture

Submod: 0086bA3.1.1

Akt: 08.05.2019 16:00

Wed, 10:00 - 12:00 (T9/Gr. Hörsaal)

Mon, 10:00 - 12:00 (T9/Gr. Hörsaal)

Description

Uwe Schöning, Theoretische Informatik kurzgefasst, 5. Auflage, Spektrum Akademischer Verlag, 2008
John E. Hopcroft, Rajeev Motwani, Jeffrey D. Ullman, Einführung in die Automatentheorie, Formale Sprachen und Komplexität, Pearson Studium, 3. Auflage, 2011
Ingo Wegener: Theoretische Informatik - Eine algorithmenorientierte Einführung, 2. Auflage, Teubner, 1999
Michael Sipser, Introduction to the Theory of Computation, 2nd ed., Thomson Course Technology, 2006
Wegener, Kompendium theoretische Informatik - Eine Ideensammlung, Teubner 1996

Additional appointments

Klausur

HFB/A Hörsaal

HFB/C Hörsaal

HFB/D Hörsaal

Klaus Kriegel

08.07.2019 14:00 - 16:00

Nachklausur

HFB/A Hörsaal

HFB/C Hörsaal

Klaus Kriegel

07.10.2019 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Klaus Kriegel

einmal, ab 10.04.2019, 10:00 - 12:00 (13 Termine)

T9/Gr. Hörsaal

Klaus Kriegel

einmal, ab 08.04.2019, 10:00 - 12:00 (11 Termine)

Practice seminar for Foundations of Theoretical Computer Science

LV: 19301202

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2 SWS

Klaus Kriegel

Practice seminar

Submod: 0086bA3.1.2

Akt: 17.04.2019 12:00

Tue, 08:00 - 10:00 (T9/053 Seminarraum)

Tue, 16:00 - 18:00 (T9/051 Seminarraum)

Tue, 16:00 - 18:00 (T9/053 Seminarraum)

Tue, 14:00 - 16:00 (T9/053 Seminarraum)

Thu, 12:00 - 14:00 (T9/053 Seminarraum)

Fri, 14:00 - 16:00 (T9/049 Seminarraum)

Thu, 16:00 - 18:00 (T9/051 Seminarraum)

Thu, 16:00 - 18:00 (T9/053 Seminarraum)

Wed, 16:00 - 18:00 (T9/051 Seminarraum)

Tue, 14:00 - 16:00 (T9/046 Seminarraum)

Wed, 08:00 - 10:00 (T9/053 Seminarraum)

Fri, 12:00 - 14:00 (T9/051 Seminarraum)

Wed, 16:00 - 18:00 (T9/053 Seminarraum)

Additional appointments

Appointment series

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 08:00 - 10:00 (14 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 16:00 - 18:00 (14 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 16:00 - 18:00 (14 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 14:00 - 16:00 (14 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 11.04.2019, 12:00 - 14:00 (13 Termine)

T9/049 Seminarraum

Klaus Kriegel

einmal, ab 12.04.2019, 14:00 - 16:00 (13 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 11.04.2019, 16:00 - 18:00 (13 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 11.04.2019, 16:00 - 18:00 (13 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

T9/046 Seminarraum

Klaus Kriegel

einmal, ab 16.04.2019, 14:00 - 16:00 (13 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 10.04.2019, 08:00 - 10:00 (13 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

Module: Database Systems (0086bA3.3)

Database Systems

LV: 19301501

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3 SWS

Agnès Voisard

Lecture

Submod: 0086bA3.3.1

Akt: 26.03.2019 16:00

Thu, 14:00 - 16:00 (T9/Gr. Hörsaal)

Tue, 14:00 - 16:00 (T9/Gr. Hörsaal)

Description

Content

Database design with ERM/ERDD. Theoretical foundations of relational database systems: relational algebra, functional dependencies, normal forms. Relational database development: SQL data definitions, foreign keys and other integrity constraints, SQL as applicable language: essential language elements, embedding in programming language. Application programming; object-relational mapping. Security and protection concepts. Transaction subject, transactional guaranties, synchronization of multi user operations, fault tolerance features. Application and new developments: data warehousing, data mining, OLAP.

Project: the topics are deepened in an implementation project for student groups.

References

Alfons Kemper, Andre Eickler: Datenbanksysteme - Eine Einführung, 5. Auflage, Oldenbourg 2004
R. Elmasri, S. Navathe: Grundlagen von Datenbanksystemen, Pearson Studium, 2005

Additional information

Requirements

ALP 1 - Functional Programming
ALP 2 - Object-oriented Programming
ALP 3 - Data structures and data abstractions
OR Informatik B

Additional appointments

Klausur

HFB/A Hörsaal

HFB/B Hörsaal

HFB/C Hörsaal

HFB/D Hörsaal

Agnès Voisard

11.07.2019 14:00 - 16:00

Nachklausur

HFB/A Hörsaal

HFB/B Hörsaal

HFB/C Hörsaal

HFB/D Hörsaal

Agnès Voisard

10.10.2019 14:00 - 16:00

Appointment series

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 11.04.2019, 14:00 - 16:00 (13 Termine)

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 09.04.2019, 14:00 - 16:00 (14 Termine)

Practice seminar for Database systems

LV: 19301502

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2 SWS

Nicolas Lehmann

Practice seminar

Submod: 0086bA3.3.2

Akt: 26.03.2019 16:00

Tue, 10:00 - 12:00 (T9/053 Seminarraum)

Wed, 12:00 - 14:00 (T9/053 Seminarraum)

Wed, 10:00 - 12:00 (T9/055 Seminarraum)

Fri, 14:00 - 16:00 (T9/055 Seminarraum)

Wed, 12:00 - 14:00 (T9/051 Seminarraum)

Mon, 08:00 - 10:00 (T9/053 Seminarraum)

Mon, 08:00 - 10:00 (T9/051 Seminarraum)

Wed, 12:00 - 14:00 (T9/055 Seminarraum)

Mon, 10:00 - 12:00 (T9/055 Seminarraum)

Mon, 16:00 - 18:00 (T9/051 Seminarraum)

Additional appointments

Appointment series

T9/053 Seminarraum

Nicolas Lehmann

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

T9/053 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 12:00 - 14:00 (13 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 10:00 - 12:00 (13 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 12.04.2019, 14:00 - 16:00 (13 Termine)

T9/051 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 12:00 - 14:00 (13 Termine)

T9/053 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 08:00 - 10:00 (12 Termine)

T9/051 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 08:00 - 10:00 (12 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 12:00 - 14:00 (13 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 10:00 - 12:00 (12 Termine)

T9/051 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 16:00 - 18:00 (12 Termine)

Bachelor's programme in Bioinformatics (2012 study regulations) (0260c_k150)

Module: Computer Science B (0260cA1.2)

Computer Science B

LV: 19302101

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4 SWS

Klaus Kriegel

Max Willert

Lecture

Submod: 0260cA1.2.1

Akt: 07.08.2019 08:00

Fri, 08:00 - 10:00 (T9/Gr. Hörsaal)

Wed, 08:00 - 10:00 (T9/Gr. Hörsaal)

Description

The class focuses on:

Fundations of programming: imperative and object-oriented programming
Algorithms and data structures: design and implementation of data structures
theory of algorithms

We use C++ as an implementation language.

Target Audience

Students with Computer Science as a minor concentration and students of bioinformatics.

References

Goodrich, Tamassia: Data Structures and Algorithms in C++
Stroustrup: Die C++ Programmiersprache
Cormen, Leiserson, Rivest, Stein: Introduction to Algorithms
Kleinberg, Tardos: Algorithm Design
Schöning: Algorithmen - kurz gefasst

Additional appointments

Klausur

Gr. Hörsaal (Raum B.001)

Klaus Kriegel

Max Willert

17.07.2019 16:00 - 18:00

T9/055 Seminarraum

Klaus Kriegel

Max Willert

21.08.2019 10:00 - 12:00

Nachklausur

T9/049 Seminarraum

T9/Gr. Hörsaal

Klaus Kriegel

Max Willert

01.10.2019 14:00 - 16:00

Appointment series

T9/Gr. Hörsaal

Klaus Kriegel

Max Willert

einmal, ab 12.04.2019, 08:00 - 10:00 (13 Termine)

T9/Gr. Hörsaal

Klaus Kriegel

Max Willert

einmal, ab 10.04.2019, 08:00 - 10:00 (14 Termine)

Exercise Computer Science B

LV: 19302102

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2 SWS

Klaus Kriegel

Max Willert

Practice seminar

Submod: 0260cA1.2.2

Akt: 30.03.2019 02:00

Tue, 10:00 - 12:00 (T9/SR 006 Seminarraum)

Wed, 14:00 - 16:00 (T9/049 Seminarraum)

Tue, 12:00 - 14:00 (T9/051 Seminarraum)

Fri, 10:00 - 12:00 (A7/SR 031)

Fri, 12:00 - 14:00 (T9/053 Seminarraum)

Tue, 08:00 - 10:00 (T9/055 Seminarraum)

Thu, 14:00 - 16:00 (T9/051 Seminarraum)

Additional appointments

Appointment series

T9/SR 006 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

T9/049 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 10.04.2019, 14:00 - 16:00 (13 Termine)

T9/051 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

A7/SR 031

Klaus Kriegel

Max Willert

einmal, ab 12.04.2019, 10:00 - 12:00 (13 Termine)

T9/053 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

T9/055 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 09.04.2019, 08:00 - 10:00 (14 Termine)

T9/051 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 11.04.2019, 14:00 - 16:00 (13 Termine)

Module: Mathematik für Bioinformatiker II (0260cA2.2)

Mathematics for Bioinformaticians II

LV: 19402201

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4 SWS

Alexander Bockmayr

Heike Siebert

Lecture

Submod: 0260cA2.2.1

Akt: 03.07.2023 09:16

Wed, 10:00 - 12:00 (A3/Hs 001 Hörsaal)

Tue, 14:00 - 16:00 (A3/Hs 001 Hörsaal)

Description

number systems: from natural numbers to real numbers, completeness property of the reals
polynomials: roots of polynomials, polynomial interpolation, rational functions
special functions: exponential function, logarithm, trigonometric functions
complex numbers: exponential function for complex numbers, complex roots
convergence of sequences and series, convergence of functions, continuous functions
differential calculus: derivative of a function, interpretations and applications of the derivative
intergral calculus: definite and indefinite integrals, fundamental theorem of calculus, applications
power series
Taylor series
basics of differential calculus for multivariate functions: partial derivative, gradient, Jacobi matrix
solution of simple differential equations

References

Kurt Meyberg, Peter Vachenauer: Höhere Mathematik 1, Springer-Verlag, 6.Auflage 2001
Dirk Hachenberger: Mathematik für Informatiker, Pearson 2005
Gerhard Berendt: Mathematische Grundlagen der Informatik, Band 2, B.I.-Wissenschaftsverlag; 1990
Thomas Westermann: Mathematik für Ingenieure mit Maple 1, Springer-Verlag, 4.Auflage 2005

Additional information

Target group:

Students of Bioinformatics (BSc, second semester)

Requirements:

Mathematik für Bioinformatiker I

Additional appointments

Nachklausur

Hs A (Raum B.006, 200 Pl.)

Alexander Bockmayr

Heike Siebert

31.07.2019 10:00 - 12:00

Appointment series

A3/Hs 001 Hörsaal

Alexander Bockmayr

Heike Siebert

einmal, ab 10.04.2019, 10:00 - 12:00 (13 Termine)

A3/Hs 001 Hörsaal

Alexander Bockmayr

Heike Siebert

einmal, ab 09.04.2019, 14:00 - 16:00 (14 Termine)

Practice seminar for Mathematics for Bioinformaticians II

LV: 19402202

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2 SWS

Heike Siebert

Alexander Bockmayr

Katinka Becker

Practice seminar

Submod: 0260cA2.2.2

Akt: 03.07.2023 09:16

Fri, 12:00 - 14:00 (T9/049 Seminarraum)

Fri, 10:00 - 12:00 (T9/053 Seminarraum)

Wed, 14:00 - 16:00 (T9/046 Seminarraum)

Additional appointments

Appointment series

T9/049 Seminarraum

Heike Siebert

Alexander Bockmayr

Katinka Becker

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

T9/053 Seminarraum

Heike Siebert

Alexander Bockmayr

Katinka Becker

einmal, ab 12.04.2019, 10:00 - 12:00 (13 Termine)

T9/046 Seminarraum

Heike Siebert

Alexander Bockmayr

Katinka Becker

einmal, ab 10.04.2019, 14:00 - 16:00 (13 Termine)

Module: Computerorientierte Mathematik II (0260cA2.4)

Computer-oriented Mathematics II

LV: 19211901

a.SAP verarbeitet

2 SWS

Carsten Gräser

Lecture

Submod: 0260bA2.4.1

Akt: 11.06.2019 12:00

Fri, 12:00 - 14:00 (T9/Gr. Hörsaal)

Description

Inhalt:

Die Auswahl der behandelten numerischen Verfahren enthält Polynominterpolation, Newton-Cotes-Formeln zur numerische Integration und Euler-Verfahren für lineare Differentialgleichungen.

Additional information

Studierende der Mathematik (Monobachelor und Lehramt) und Bioinformatik, sowie Numerikinteressierte aus Physik, Informatik und anderen Natur- und Geisteswissenschaften.

Additional appointments

Klausur

Hs 1a Hörsaal

Carsten Gräser

12.07.2019 12:00 - 15:00

Nachklausur

HFB/B Hörsaal

Carsten Gräser

30.09.2019 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Carsten Gräser

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

Practice seminar for Computer-oriented Mathematics II

LV: 19211902

a.SAP verarbeitet

2 SWS

Xingjian Zhang-Schneider

Carsten Gräser

Practice seminar

Submod: 0260bA2.4.2

Akt: 15.08.2019 12:00

Tue, 12:00 - 14:00 (A6/SR 009 Seminarraum)

Thu, 10:00 - 12:00 (A3/SR 130 Seminarraum (Hinterhaus))

Tue, 12:00 - 14:00 (A6/SR 025/026 Seminarraum)

Thu, 12:00 - 14:00 (A6/SR 009 Seminarraum)

Thu, 10:00 - 12:00 (KöLu24-26/SR 006 Neuro/Mathe)

Thu, 12:00 - 14:00 (A7/SR 140 Seminarraum (Hinterhaus))

Tue, 12:00 - 14:00 (A3/SR 130 Seminarraum (Hinterhaus))

Tue, 12:00 - 14:00 (A3/SR 119)

Additional information

Studierende der Mathematik (Monobachelor und Lehramt) und Bioinformatik, sowie Numerikinteressierte aus Physik, Informatik und anderen Natur- und Geisteswissenschaften.

Additional appointments

Appointment series

A6/SR 009 Seminarraum

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

A3/SR 130 Seminarraum (Hinterhaus)

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 10:00 - 12:00 (13 Termine)

A6/SR 025/026 Seminarraum

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

A6/SR 009 Seminarraum

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 12:00 - 14:00 (13 Termine)

KöLu24-26/SR 006 Neuro/Mathe

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 10:00 - 12:00 (13 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 12:00 - 14:00 (13 Termine)

A3/SR 130 Seminarraum (Hinterhaus)

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

A3/SR 119

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

Module: Statistics for Biosciences II (0260cA2.6)

Practice seminar for Statistics II for Biosciences

LV: 60100102

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2 SWS

Jochen Kruppa

Practice seminar

Submod: 0260cA2.6.2

Akt: 03.07.2023 09:16

Wed, 16:00 - 18:00 (T9/055 Seminarraum)

Tue, 16:00 - 18:00 (T9/046 Seminarraum)

Fri, 14:00 - 16:00 (T9/053 Seminarraum)

Tue, 10:00 - 12:00 (A3/SR 119)

Additional appointments

Appointment series

T9/055 Seminarraum

Jochen Kruppa

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

T9/046 Seminarraum

Jochen Kruppa

einmal, ab 09.04.2019, 16:00 - 18:00 (14 Termine)

T9/053 Seminarraum

Jochen Kruppa

einmal, ab 12.04.2019, 14:00 - 16:00 (13 Termine)

A3/SR 119

Jochen Kruppa

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

Module: Molecular Biology and Biochemistry I (0260cA3.3)

Biochemie I - Grundlagen der Biochemie

LV: 21601a

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2 SWS

Markus Wahl

Florian Heyd

Helge Ewers

Lecture

Submod: 0260cA3.3.1

Akt: 03.07.2023 09:16

Wed, 12:00 - 14:00 (Hs Anorganik)

Description

Qualifikationsziele:
Die Studentinnen und Studenten kennen die Entstehung und molekulare Struktur der wichtigsten zellulären Makromoleküle und Stoffklassen sowie ihren biologischen Kontext. Der Schwerpunkt liegt auf einem chemischen Grundverständnis des molekularen Aufbaus von Biomolekülen.

Inhalte:
Chemische und zellbiologische Grundlagen, Struktur von DNA und RNA, Replikation und Transkription, Proteinbiosynthese, Regulation der Genexpression, gentechnologische Methoden, Aminosäuren und Peptide, Proteinstruktur und Proteinfaltung, Proteom, posttranslationale Modifikationen, Methoden der Proteinforschung, Enzyme, Kohlenhydrate, Lipide und Biomembranen, Einführung in den Stoffwechsel und die Stoffwechselregulation.

Prof. Dr. H. Ewers: helge.ewers@fu-berlin.de
Prof. Dr. F. Heyd: florian.heyd@fu-berlin.de
Prof. Dr. M. Wahl: mwahl@zedat.fu-berlin.de

Additional information

Vorbesprechung Di, 09.04.19, 12:00 - 14.00 Uhr, Hs, AC, Fabeckstr. 34-36

Additional information for students

entspricht Molekularbiologie und Biochemie I für Bioinformatiker.

Additional appointments

VORBESPRECHUNG 21601 Grundlagen der Biochemie

Hs Anorganik

Markus Wahl

Florian Heyd

Helge Ewers

09.04.2019 12:00 - 14:00

Repetitorium: 21601 - BC I - Grundlagen der Biochemie

Hs Anorganik

Markus Wahl

Florian Heyd

Helge Ewers

12.07.2019 12:00 - 14:00

Klausur: 21601 - BC I (Zusätzliche Hs)

Hs A (Raum B.006, 200 Pl.)

Hs B (Raum B.004, 100 Pl.)

Markus Wahl

Florian Heyd

Helge Ewers

19.07.2019 14:00 - 16:00

Nachklausur: 21601 (zusätzliche Hs)

Hs A (Raum B.006, 200 Pl.)

Hs B (Raum B.004, 100 Pl.)

Markus Wahl

Florian Heyd

Helge Ewers

18.09.2019 10:00 - 12:00

Appointment series

Hs Anorganik

Markus Wahl

Florian Heyd

Helge Ewers

einmal, ab 10.04.2019, 12:00 - 14:00 (13 Termine)

Übungen zur Biochemie I - Grundlagen der Biochemie

LV: 21601b

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2 SWS

Markus Wahl

Florian Heyd

Helge Ewers

Practice seminar

Submod: 0260cA3.3.2

Akt: 03.07.2023 09:16

Tue, 12:00 - 14:00 (SR 23.02 SR 34.16/17Hs KristallographieSR 33.02)

Wed, 08:00 - 10:00 (Hs Kristallographie)

Wed, 10:00 - 12:00 (SR 33.03 SR 34.16/17)

Description

Qualifikationsziele: Die Studentinnen und Studenten kennen die Entstehung und molekulare Struktur der wichtigsten zellulären Makromoleküle und Stoffklassen sowie ihren biologischen Kontext. Der Schwerpunkt liegt auf einem chemischen Grundverständnis des molekularen Aufbaus von Biomolekülen. Inhalte: Chemische und zellbiologische Grundlagen, Struktur von DNA und RNA, Replikation und Transkription, Proteinbiosynthese, Regulation der Genexpression, gentechnologische Methoden, Aminosäuren und Peptide, Proteinstruktur und Proteinfaltung, Proteom, posttranslationale Modifikationen, Methoden der Proteinforschung, Enzyme, Kohlenhydrate, Lipide und Biomembranen, Einführung in den Stoffwechsel und die Stoffwechselregulation. Prof. Dr. H. Ewers: helge.ewers@fu-berlin.de Prof. Dr. F. Heyd: florian.heyd@fu-berlin.de Prof. Dr. M. Wahl: mwahl@zedat.fu-berlin.de

Additional information

Die Übungen finden n.V. in kleineren Gruppen i.d.R. dienstags von 12:00 - 14:00 Uhr bzw. mittwochs von 10:00 - 12:00 Uhr Uhr statt. Die Verteilung findet im Rahmen der Vorbesprechung (s. 21601a) statt.

Additional appointments

Appointment series

SR 23.02

SR 34.16/17

Hs Kristallographie

SR 33.02

Markus Wahl

Florian Heyd

Helge Ewers

einmal, ab 16.04.2019, 12:00 - 14:00 (13 Termine)

Hs Kristallographie

Markus Wahl

Florian Heyd

Helge Ewers

einmal, ab 17.04.2019, 08:00 - 10:00 (12 Termine)

SR 33.03

SR 34.16/17

Markus Wahl

Florian Heyd

Helge Ewers

einmal, ab 17.04.2019, 10:00 - 12:00 (12 Termine)

Module: Molecular Biology and Biochemistry III (0260cA3.5)

Molekularbiologie und Biochemie III

LV: 21699a

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2 SWS

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

Lecture

Submod: 0260cA3.5.1

Akt: 03.07.2023 09:16

Fri, 10:00 - 12:00 (Hörsaal/Thielallee 67)

Additional information

Qualifikationsziele:
Das in Molekularbiologie und Biochemie II erlangte Grundlagenverständnis wird in den Zusammenhang komplexer biologischer Systeme gestellt. Diese sind:
Verständnis der Rezeptorvermittelten Signaltransduktion und der Regulation von Zellzyklus und Zelltod.
Verständnis der molekularbiologischen und zellbiologischen Eigenschaften von metastasierenden Tumorzellen
Verständnis der Wechselwirkungen von Pathogenen, Wirtszellen und Immunsystem
Verständnis der Prinzipien der DNA-Medizin

Inhalte:
Wachstumsfaktoren, Rezeptoren und Signaltransduktion zur Regulation von Zellzyklus und Zelltod
Grundlagen der Immunologie: angeborene, erworbene Immunabwehr
Antigen-präsentierende Zellen, Effektorzellen
PAMP- und DAMP-Konzepte der Antigen-Prozessierung bei Infektion und Tumor-Bekämpfung
DNA-Medizin und Gentherapie

Additional information for students

Vorlesung für Studierende der Bioinformatik

Additional appointments

Klausur - Molekularbiologie und Biochemie III für Bioinformatiker

Hörsaal/Thielallee 67

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

19.07.2019 10:00 - 12:00

Nachklausur - Molekularbiologie und Biochemie III für Bioinformatiker

Hörsaal/Thielallee 67

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

11.10.2019 10:00 - 12:00

Appointment series

Hörsaal/Thielallee 67

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

einmal, ab 12.04.2019, 10:00 - 12:00 (13 Termine)

Übungen zu Molekularbiologie und Biochemie III

LV: 21699b

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2 SWS

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

Practice seminar

Submod: 0260cA3.5.2

Akt: 03.07.2023 09:16

Wed, 14:00 - 16:00 (Hörsaal/Thielallee 67)

Additional information

Additional information for students

Übungen zu 21699a für Studierende der Bioinformatik

Additional appointments

Hörsaal/Thielallee 67

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

22.05.2019 12:00 - 14:00

Appointment series

Hörsaal/Thielallee 67

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

einmal, ab 17.04.2019, 14:00 - 16:00 (11 Termine)

Module: Medizinische Physiologie (0260cA3.7)

Medical Physiology

LV: 60100201

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2 SWS

No lecturers

Lecture

Submod: 0260cA3.7.1

Akt: 05.04.2019 12:00

Seminar for Medical Physiology

LV: 60100211

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2 SWS

No lecturers

Seminar

Submod: 0260cA3.7.2

Akt: 20.03.2019 12:00

Internship for Medical Physiology

LV: 60100230

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2 SWS

No lecturers

Internship

Submod: 0260cA3.7.3

Akt: 20.03.2019 12:00

Module: Database Systems (0260cA4.1)

Database Systems

LV: 19301501

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3 SWS

Agnès Voisard

Lecture

Submod: 0086bA3.3.1

Akt: 26.03.2019 16:00

Thu, 14:00 - 16:00 (T9/Gr. Hörsaal)

Tue, 14:00 - 16:00 (T9/Gr. Hörsaal)

Description

Content

Project: the topics are deepened in an implementation project for student groups.

References

Alfons Kemper, Andre Eickler: Datenbanksysteme - Eine Einführung, 5. Auflage, Oldenbourg 2004
R. Elmasri, S. Navathe: Grundlagen von Datenbanksystemen, Pearson Studium, 2005

Additional information

Requirements

ALP 1 - Functional Programming
ALP 2 - Object-oriented Programming
ALP 3 - Data structures and data abstractions
OR Informatik B

Additional appointments

Klausur

HFB/A Hörsaal

HFB/B Hörsaal

HFB/C Hörsaal

HFB/D Hörsaal

Agnès Voisard

11.07.2019 14:00 - 16:00

Nachklausur

HFB/A Hörsaal

HFB/B Hörsaal

HFB/C Hörsaal

HFB/D Hörsaal

Agnès Voisard

10.10.2019 14:00 - 16:00

Appointment series

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 11.04.2019, 14:00 - 16:00 (13 Termine)

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 09.04.2019, 14:00 - 16:00 (14 Termine)

Practice seminar for Database systems

LV: 19301502

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2 SWS

Nicolas Lehmann

Practice seminar

Submod: 0086bA3.3.2

Akt: 26.03.2019 16:00

Tue, 10:00 - 12:00 (T9/053 Seminarraum)

Wed, 12:00 - 14:00 (T9/053 Seminarraum)

Wed, 10:00 - 12:00 (T9/055 Seminarraum)

Fri, 14:00 - 16:00 (T9/055 Seminarraum)

Wed, 12:00 - 14:00 (T9/051 Seminarraum)

Mon, 08:00 - 10:00 (T9/053 Seminarraum)

Mon, 08:00 - 10:00 (T9/051 Seminarraum)

Wed, 12:00 - 14:00 (T9/055 Seminarraum)

Mon, 10:00 - 12:00 (T9/055 Seminarraum)

Mon, 16:00 - 18:00 (T9/051 Seminarraum)

Additional appointments

Appointment series

T9/053 Seminarraum

Nicolas Lehmann

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

T9/053 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 12:00 - 14:00 (13 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 10:00 - 12:00 (13 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 12.04.2019, 14:00 - 16:00 (13 Termine)

T9/051 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 12:00 - 14:00 (13 Termine)

T9/053 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 08:00 - 10:00 (12 Termine)

T9/051 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 08:00 - 10:00 (12 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 12:00 - 14:00 (13 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 10:00 - 12:00 (12 Termine)

T9/051 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 16:00 - 18:00 (12 Termine)

Module: Fundamentals of Theoretical Computer Science (0260cA4.2)

Foundations of Theoretical Computer Science

LV: 19301201

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3 SWS

Klaus Kriegel

Lecture

Submod: 0086bA3.1.1

Akt: 08.05.2019 16:00

Wed, 10:00 - 12:00 (T9/Gr. Hörsaal)

Mon, 10:00 - 12:00 (T9/Gr. Hörsaal)

Description

Uwe Schöning, Theoretische Informatik kurzgefasst, 5. Auflage, Spektrum Akademischer Verlag, 2008
John E. Hopcroft, Rajeev Motwani, Jeffrey D. Ullman, Einführung in die Automatentheorie, Formale Sprachen und Komplexität, Pearson Studium, 3. Auflage, 2011
Ingo Wegener: Theoretische Informatik - Eine algorithmenorientierte Einführung, 2. Auflage, Teubner, 1999
Michael Sipser, Introduction to the Theory of Computation, 2nd ed., Thomson Course Technology, 2006
Wegener, Kompendium theoretische Informatik - Eine Ideensammlung, Teubner 1996

Additional appointments

Klausur

HFB/A Hörsaal

HFB/C Hörsaal

HFB/D Hörsaal

Klaus Kriegel

08.07.2019 14:00 - 16:00

Nachklausur

HFB/A Hörsaal

HFB/C Hörsaal

Klaus Kriegel

07.10.2019 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Klaus Kriegel

einmal, ab 10.04.2019, 10:00 - 12:00 (13 Termine)

T9/Gr. Hörsaal

Klaus Kriegel

einmal, ab 08.04.2019, 10:00 - 12:00 (11 Termine)

Practice seminar for Foundations of Theoretical Computer Science

LV: 19301202

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2 SWS

Klaus Kriegel

Practice seminar

Submod: 0086bA3.1.2

Akt: 17.04.2019 12:00

Tue, 08:00 - 10:00 (T9/053 Seminarraum)

Tue, 16:00 - 18:00 (T9/051 Seminarraum)

Tue, 16:00 - 18:00 (T9/053 Seminarraum)

Tue, 14:00 - 16:00 (T9/053 Seminarraum)

Thu, 12:00 - 14:00 (T9/053 Seminarraum)

Fri, 14:00 - 16:00 (T9/049 Seminarraum)

Thu, 16:00 - 18:00 (T9/051 Seminarraum)

Thu, 16:00 - 18:00 (T9/053 Seminarraum)

Wed, 16:00 - 18:00 (T9/051 Seminarraum)

Tue, 14:00 - 16:00 (T9/046 Seminarraum)

Wed, 08:00 - 10:00 (T9/053 Seminarraum)

Fri, 12:00 - 14:00 (T9/051 Seminarraum)

Wed, 16:00 - 18:00 (T9/053 Seminarraum)

Additional appointments

Appointment series

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 08:00 - 10:00 (14 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 16:00 - 18:00 (14 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 16:00 - 18:00 (14 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 14:00 - 16:00 (14 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 11.04.2019, 12:00 - 14:00 (13 Termine)

T9/049 Seminarraum

Klaus Kriegel

einmal, ab 12.04.2019, 14:00 - 16:00 (13 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 11.04.2019, 16:00 - 18:00 (13 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 11.04.2019, 16:00 - 18:00 (13 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

T9/046 Seminarraum

Klaus Kriegel

einmal, ab 16.04.2019, 14:00 - 16:00 (13 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 10.04.2019, 08:00 - 10:00 (13 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

Master's programme in Bioinformatics

Master Bioinformatik (StO/PO 2012) (0262b_MA120)

Module: Research Lab (0262bA1.6)

Bioinformatics Research Internship

LV: 19400432

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0 SWS

No lecturers

Research Internship

Submod: 0262bA1.6.1

Akt: 04.03.2019 12:00

Module: Biodiversität und Evolution (0262bB1.1)

Biodiversität und Evolution/ Biodiversity and Evolution (V)

LV: 23779a

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2 SWS

No lecturers

Lecture

Submod: 0262bB1.1.1

Akt: 03.07.2023 09:16

Biodiversität und Evolution / Biodiversity and Evolution (Ü)

LV: 23779b

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1 SWS

No lecturers

Practice seminar

Submod: 0262bB1.1.2

Akt: 03.07.2023 09:16

Biodiversität und Evolution / Biodiversity and Evolution (S)

LV: 23779c

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2 SWS

No lecturers

Seminar

Submod: 0262bB1.1.3

Akt: 03.07.2023 09:16

Module: Netzwerkanalyse (0262bB1.3)

Network Analysis

LV: 19401701

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2 SWS

Alexander Bockmayr

Martin Vingron

Lecture

Submod: 0262bB1.3.1

Akt: 04.06.2019 10:00

Thu, 10:00 - 12:00 (A6/SR 032 Seminarraum)

Description

The aim of the course is to get to know basic mathematical and algorithmic concepts in the field of modeling, simulation and analysis of molecular networks in the context of algorithmic systems biology. The students learn to analyse a biological or medical problem, to select and implement a suitable modelling approach for given data and to assess and communicate the results.

Contents:

Topics from the following areas are dealt with in depth:
- Modelling of biochemical networks with common differential equations
- Discrete modelling of regulatory networks
- Constraint-based modeling of metabolic networks
- Stochastic and hybrid modelling

References

Literatur

wird in der Veranstaltung bekanntgegeben.

Additional appointments

Zusatztermin

A6/SR 032 Seminarraum

Alexander Bockmayr

Martin Vingron

13.06.2019 08:00 - 10:00

Klausur

Hs A (Raum B.006, 200 Pl.)

Alexander Bockmayr

Martin Vingron

12.07.2019 10:00 - 12:00

Appointment series

A6/SR 032 Seminarraum

Alexander Bockmayr

Martin Vingron

einmal, ab 11.04.2019, 10:00 - 12:00 (13 Termine)

Practice seminar for Network Analysis

LV: 19401702

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2 SWS

Alexander Bockmayr

Martin Vingron

Markus Arthur Köbis

Practice seminar

Submod: 0262bB1.3.2

Akt: 20.03.2019 16:00

Fri, 10:00 - 12:00 (T9/046 Seminarraum)

Seminar for Network Analysis

LV: 19401711

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2 SWS

Alexander Bockmayr

Martin Vingron

Seminar

Submod: 0262bB1.3.3

Akt: 04.03.2019 12:00

Fri, 12:00 - 14:00 (T9/046 Seminarraum)

Module: Physiologie (0262bB1.4)

Physiology

LV: 60100401

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2 SWS

No lecturers

Lecture

Submod: 0262bB1.4.1

Akt: 03.07.2023 09:16

Practice seminar for Physiology

LV: 60100402

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2 SWS

No lecturers

Practice seminar

Submod: 0262bB1.4.2

Akt: 03.07.2023 09:16

Seminar for Physiology

LV: 60100411

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2 SWS

No lecturers

Seminar

Submod: 0262bB1.4.3

Akt: 03.07.2023 09:16

Module: Sequenzanalyse (0262bB1.5)

Sequence Analysis

LV: 19401601

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2 SWS

Knut Reinert

Lecture

Submod: 0262bB1.5.1

Akt: 03.07.2023 09:16

Tue, 10:00 - 12:00 (T9/051 Seminarraum)

Description

Goals:

The students will gain a deeper unterstanding for basic algorithmic concepts for the analysis of genomic sequencing related to state of the art research in bioinformatics and biotechnology. They will learn various paradigms for the approximate search. They will know which algorithms should be preferred under what circumstances and are able to grasp key concepts of scientific publications related to this field.

Some examples of subjects that will be more deeply discussed:

Paradigms for approximative, semiglobal alignments (read mapping)
Methods for genomic assembly and metagenomic assembly
Methods for the identification of genetic variants (SNVs, SNPs, CNVs) - algorithmic problems of quantifying expession using NGS data

For further information go to: https://kvv.imp.fu-berlin.de/portal/

Additional information

Compulsory optional subject in bioinformatics.

Additional appointments

Appointment series

T9/051 Seminarraum

Knut Reinert

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

Practice seminar for Sequence Analysis

LV: 19401602

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2 SWS

Knut Reinert

Practice seminar

Submod: 0262bB1.5.2

Akt: 03.07.2023 09:16

Thu, 12:00 - 14:00 (T9/049 Seminarraum)

Seminar for Sequence Analysis

LV: 19401611

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB1.5.3

Akt: 03.07.2023 09:16

Fri, 14:00 - 16:00 (A3/ 024 Seminarraum )

Module: Strukturelle Bioinformatik (0262bB1.6)

Structural Bioinformatics

LV: 60100501

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2 SWS

No lecturers

Lecture

Submod: 0262bB1.6.1

Akt: 03.07.2023 09:16

Description

Course overview:

This course will take place in the semester break (Sept - Oct. 2019), 8 days during 2 weeks, daily 10 am - 5 pm

The Structural Bioinformatics Group offers a broad and comprehensive set of lectures in the areas of structural bioinformatics and drug design. The course begins with a general introduction of the drug design pipeline and an introductory course on the structural bioinformatics research field. These lead on to more specialized topics, amongst others in chemo-informatics, molecular docking, homology modeling and more detailed aspects of toxicity prediction models.

Structure of the course:

This course consists of eight lecture series. A detailed lecture for a period of 2 hrs on individual topics is delivered in the morning session. Afternoon session consists of an assignment for each topic. This part of the lecture course is assessed by examination, which will take place at the end of the course. Students are asked to delivered a seminar/presentation for 25 minutes, on the topic assigned to them. The material for the examination will be provided in advance, ensuring that the students have required time for preparation.

Topics for lectures are:

1. Introductory session
2. Peptide design
3. Homology modeling
4. 3D Molecular superimposition of small molecules
5. In silico screening, molecular fingerprints and chemical similarity
6. Molecular docking
7. Natural products and fragments based drug discovery
8. In silico toxicity prediction

For further information see: http://bioinf-apache.charite.de/main/course_theoretical.php

Additional information

This course will take place in the semester break.

Additional appointments

Appointment series

Practice seminar for Structural Bioinformatics

LV: 60100502

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2 SWS

No lecturers

Practice seminar

Submod: 0262bB1.6.2

Akt: 03.07.2023 09:16

Seminar for Structural Bioinformatics

LV: 60100511

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2 SWS

No lecturers

Seminar

Submod: 0262bB1.6.3

Akt: 03.07.2023 09:16

Module: Current Issues in Cell Physiology (0262bB2.1)

Current Issues in Cell Physiology

LV: 60100613

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4 SWS

No lecturers

Lab Seminar

Submod: 0262bB2.1.1

Akt: 03.07.2023 09:16

Description

Block course during the semester break in summer 2019 (two weeks all day).

The exact date will be determined by doodle.

Location: Charité Campus Benjamin Franklin (Steglitz, Hindenburgdamm 30), Institut für Klinische Physiologie

For further information: http://klinphys.charite.de/bioinfo/

or mail to Dorothee Günzel

Within this course you will generate structural models of proteins by homology modelling. You will develop hypotheses which amino acids should be decisive for the structure. These Hypotheses will be tested by carrying out molecular biologic experiments (such as site-directed mutagenesis by using two-step PCR). The construct will be cloned into expression vectors, transformed and amplified in bacteria, extracted, sequenced and overexpressed in cultured cells.

These cells will be analyzed in the confocal laser scanning microscope and by other techniques. The results will be evaluated and interpreted in the context of the original hypitheses.

The experimental part will be flanked by seminars introducing the theoretical background and the various techniques.

The exact program of this course depends on the actual research of the institute and is tightly connected to our actual projects.

References

Milatz S, Piontek J, Hempel C, Meoli L, Grohe C, Fromm A, Lee IM, El-Athman R, Günzel D (2017) Tight junction strand formation by claudin-10 isoforms and claudin-10a/-10b chimeras. Ann. N.Y. Acad. Sci. 1405: 102-115 (https://www.ncbi.nlm.nih.gov/pubmed/28633196)

Piontek J, Winkler L, Wolburg H, Müller SL, Zuleger N, Piehl C, Wiesner B, Krause G, Blasig IE (2008) Formation of tight junction: determinants of homophilic interaction between classic claudins. FASEB J. 22: 146-158 (https://www.ncbi.nlm.nih.gov/pubmed/17761522)

Additional information

Please bring lab coat, if available!

Additional appointments

Appointment series

Module: Angewandte Sequenzanalyse (0262bB2.2)

Applied Sequence Analysis

LV: 19400313

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4 SWS

Sandro Andreotti

Lab Seminar

Submod: 0262bB2.2.1

Akt: 03.07.2023 09:16

Wed, 10:00 - 14:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

Goals:

The students are able to use standard programs of sequence analysis independetly. They know various concepts and are able to use and program a chosen system. The students will be able to design new workflows and present the results graphically.

Additional appointments

A6/017 Frontalunterrichtsraum (Bioinf)

Sandro Andreotti

12.07.2019 14:00 - 16:00

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Sandro Andreotti

einmal, ab 10.04.2019, 10:00 - 14:00 (13 Termine)

Practical Course: Applied Machine Learning

LV: 19403613

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4 SWS

Tim Conrad

Bernhard Renard

Lab Seminar

Submod: 0262bB2.2.1

Akt: 03.07.2023 09:16

Mon, 10:00 - 14:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

Goals:

The students will be introduced to the basic statistical and algorithmic concepts in the field of Machine Learning, especially in the context of current research in bioinformatics, biology and biotechnology. They will work on several practical problems and implement / use the methods learned during the lectures to extract information from biological datasets in R. In particular, they will learn how to process data, choose the appropriate model to answer specific questions, evaluate and communicate the results. The students will be assigned weekly exercises which they have to complete. Presenting in turns the results from the exercises, in addition to a final oral exam, are prerequisites to pass the course.

Content:

Pre-processing of biological data and model implementation with R
Classification metrics and permutation approaches
Linear Models for Regression and Classification
Kernel Methods for Regression and Classification - Feature Selection
Semi-supervised learning / active learning
Classification trees and Random Forests
Graphical models

For further information see: http://medicalbioinformatics.de/teaching/item/applied-machine-learning-ss19

Additional information

Prerequisites:

Attended the Statistics course from the Master in Bioinformatics FU (or equivalent)

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Tim Conrad

Bernhard Renard

einmal, ab 08.04.2019, 10:00 - 14:00 (12 Termine)

Module: Current Issues in Medical Genomics (0262bB2.6)

Practical Course: Applied Machine Learning

LV: 19403613

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4 SWS

Tim Conrad

Bernhard Renard

Lab Seminar

Submod: 0262bB2.2.1

Akt: 03.07.2023 09:16

Mon, 10:00 - 14:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

Goals:

Content:

Pre-processing of biological data and model implementation with R
Classification metrics and permutation approaches
Linear Models for Regression and Classification
Kernel Methods for Regression and Classification - Feature Selection
Semi-supervised learning / active learning
Classification trees and Random Forests
Graphical models

For further information see: http://medicalbioinformatics.de/teaching/item/applied-machine-learning-ss19

Additional information

Prerequisites:

Attended the Statistics course from the Master in Bioinformatics FU (or equivalent)

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Tim Conrad

Bernhard Renard

einmal, ab 08.04.2019, 10:00 - 14:00 (12 Termine)

Current Issues in Medical Genomics

LV: 60100713

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4 SWS

Rosario Piro

Lab Seminar

Submod: 0262bB2.6.1

Akt: 03.07.2023 09:16

Mon, 09:00 - 18:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

The goal of the practical course in medical genomics is to learn how to apply state-of-the-art computational and statistical methods for the analysis of high-throughput DNA sequencing data, as it is already done for medical diagnostics. All important steps of the workflow will be covered: the initial quality control, the alignment of sequencing data (reads), and the identification of mutations (variant calling) as well as their annotation and interpretation.

Although the course is aiming at medical applications, the used techniques can be applied also to other fields of research.

Additional information

This practical course will be taking place as a block course from July 15th to 25th, 2019!

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Rosario Piro

einmal, ab 15.07.2019, 09:00 - 18:00 (10 Termine)

Module: Forschungsmodul A (0262bB3.1)

Reaction Diffusion Simulation

LV: 19402311

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2 SWS

Frank Noe

Christoph Wehmeyer

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Mon, 10:00 - 16:00 (A6/030 Rechnerpoolraum)

Description

Reaction diffusion simulations are important tools for the modeling of signal transduction cascades in cellular processes. This seminar consists of lectures for the introduction to reaction-diffusion processes as well as "hands-on" computer exercises in which the particle-based reaction-diffusion simulator ReaDDy (https://readdy.github.io/) will be taught.

For more information see >>> here

Additional information

Master students with a background in physics, chemistry, bioinformatics or computer science

Additional appointments

Appointment series

A6/030 Rechnerpoolraum

Frank Noe

Christoph Wehmeyer

einmal, ab 15.07.2019, 10:00 - 16:00 (7 Termine)

Journal Club Computational Biology

LV: 19402911

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 04.03.2019 12:00

Mon, 14:00 - 16:00 (T9/K 040 Multimediaraum)

Description

Content:

In this seminar we will present original work in Computational biology as well as progress reports from PhD students. Master students will either be assigend a paper, or present their MSc thesis plans and results, or report about their "Fortgeschrittenenpraktikum". Credits are only awarded for the presentation of papers.

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/K 040 Multimediaraum

Knut Reinert

einmal, ab 08.04.2019, 14:00 - 16:00 (12 Termine)

Compact Data Structures

LV: 19404211

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Fri, 10:00 - 12:00 (T9/049 Seminarraum)

Description

In this seminar we will investigate succinct, compact and compressed data structures which have lately become increasingly
more important in Bioinformatics. The best example is the very popular and widely used Compressed Suffix Array (also called FM-index). It uses constant time rank queries on bitvectors, as a replacement for table lookups.

In the seminar we will read original papers and parts of the new book "Compact data structures" by Gonzalo Navarro. The first part of the seminar will consist of chapters of the book reviewing basic techniques. The second part will deal with recent bioinformatics data structures

References

Gonzalo Navarro: Compact data structures, Cambridge University Press

Additional appointments

Appointment series

T9/049 Seminarraum

Knut Reinert

einmal, ab 12.04.2019, 10:00 - 12:00 (13 Termine)

Introduction to Computational Proteomics

LV: 19404511

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2 SWS

Chris Bielow

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Fri, 12:00 - 14:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

This seminar will cover central aspects of modern bottom-up proteome analysis by mass spectrometry with a focus on bioinformatic algorithms and data analysis.

After a brief introduction to the field of mass spectrometry-based proteomics (instrument types, data properties, overview of bioinformatics challenges) we will explore the big cornerstones, including isotope models and averagines, scoring algorithms for the identification of mass spectra, false-discovery-rate estimation using decoy peptides, absolute and relative quantification of proteins and correlation between mRNA and protein expression.

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Chris Bielow

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

Methods for Genome Analysis

LV: 19404711

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2 SWS

Birte Katharina Kehr

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Wed, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Computational Meta-Omics

LV: 19404811

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2 SWS

Thilo Muth

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Wed, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Description

The growing interest in microbial communities is due to findings that demonstrate the influence of microorganisms on human health. For example, microbiome research investigates the role of intestinal microbiota in diseases such as diabetes and morbus

Crohn or health disorders such as food allergies and obesity. In this context, an imbalanced microbiome is associated with being the cause or the consequence of certain diseases or health disorders. In order to identify and quantify the microorganisms present in experimental samples, meta-omics analyses (e.g. metagenomics, metatranscriptomics, metaproteomics) are conducted that heavily rely on computational strategies from bioinformatics.

The main objectives of this seminar are (1) to introduce both computational and experimental meta-omics methods for analyzing single microbial and microbiome samples with a particular focus on metagenomics and metaproteomics, (2) to provide a general overview on the most commonly employed and recently proposed bioinformatics strategies in the field, and (3) to discuss the shortcomings of current meta-omics approaches in the context of microbiome research and diagnostics of bacteria and viruses.

Additional appointments

Appointment series

A6/SR 031 Seminarraum

Thilo Muth

einmal, ab 17.04.2019, 14:00 - 18:00 (7 Termine)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221a

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2 SWS

Irmtraud Meyer

Lecture

Submod: 0262bB3.1.1

Akt: 03.07.2023 09:16

Mon, 09:00 - 17:00 (T9/049 Seminarraum)

Mon, 09:00 - 17:00 (A6/SR 031 Seminarraum)

Description

The last few years have seen an explosion of methods for investigating RNA structures and RNA-RNA interactions. In fact, general methods for examining the RNA structurome and RNA-RNA interactome in vivo and on a transcriptome-wide scale were only published in 2016. These methods open exciting possibilities to explore transcriptomes and to discover entirely novel mechanisms of gene regulation on RNA level. Many of these new methods combine novel experimental protocols with dedicated computational analysis pipelines in order to make discoveries. Both aspects (experimental and computational) typically require sophisticated protocols that are both key to discovery-making. Typically, the computational aspects cannot be understood (or optimised) without considering the experimental protocol and vice versa. The goal of this inter-disciplinary module, consisting of lectures, exercises and a seminar, is to introduce you to: * key theoretical concepts, computational strategies and algorithms for predicting RNA secondary structures and related features, covering probabilistic and comparative machine learning methods * key experimental concepts for transcriptome-wide RNA structure and RNA-RNA interaction probing * key research contributions published in recent years Target audience This inter-disciplinary module is targeted at graduate students in Biochemistry, Bioinformatics and Computer Science. It provides a self-contained, intense introduction covering both computational and experimental aspects ranging from key concepts to the latest research literature. Interactions between students from different scientific backgrounds are actively encouraged via team-work during all aspects of the module. It goes without saying that no participant is expected to know everything, but everyone is expected to learn something outside their official area of expertise. Format The module comprises a lecture-part where we will cover the basics you need to know in order to understand the currently existing approaches as well as a seminar-part where you will present and discuss ongoing research in this field as well as a small research proposal of your own. Formally speaking, the module comprises lectures example classes seminar talks Language Note that the language for the entire module is English. Student participation In order to pass the entire module, you need to: give one or more presentations (you may propose 6 papers to avoid conflicts; you may work in teams of two) meet with one of the instructors at least 3 working days before your presentation to finalize your draft presentation and clarify any remaining questions attend all events (if you miss a class unexcused, you may be asked to write a report; select exceptions are made for documented university exams) participate actively throughout (e.g. by chairing a discussion) propose and defend a small potential research project of your own (including a written proposal of around 3 pages) come prepared (e.g. read papers ahead of time so you could readily summarize and discuss them) provide feedback to fellow students via a small questionnaire to help them improve their presentation skills What you will learn fundamental principles underlying existing computational and experimental methods and their pros and cons critically present and discuss research concepts and strategies propose and defend a small original research project of your own chair discussions Grading Grading of the module will be on a pass/fail basis. Contact In case of questions, please contact Irmtraud Meyer by email or phone (030-9406-3292), see also https://www.mdc-berlin.de/meyer for details.

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

This module comprises lectures (216221a), exercises (216221b) and a seminar (216221c) which have to be booked in conjunction. Note that registrations for this module open on 1.12.2018 and close on 18.01.2019 (Friday). Registrations are only possible via KVV https://kvv.imp.fu-berlin.de/vv/details?s=SS+19&lvnr=216221a bzw. https://kvv.imp.fu-berlin.de/portal/site/2843857c-01fb-4323-8afe-0fe1072ef663 You will receive an email confirming your registration within a week of the registration deadline. N.B.: For now, Master students in Computer Science can only register for the lectures and exercises (216221a and 216221b). This restriction, however, does not apply to Master students in Bioinformatics and Master students in Biochemistry.

Additional appointments

Appointment series

T9/049 Seminarraum

Irmtraud Meyer

einmal, ab 25.03.2019, 09:00 - 17:00 (5 Termine)

T9/049 Seminarraum

Irmtraud Meyer

einmal, ab 01.04.2019, 09:00 - 17:00 (3 Termine)

A6/SR 031 Seminarraum

Irmtraud Meyer

einmal, ab 04.03.2019, 09:00 - 17:00 (4 Termine)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221b

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1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 03.07.2023 09:16

Description

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221c

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Description

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Computer-aided Drug Design - Methods and Application

LV: 60101711

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Description

Introductory seminar to computer-aided drug design, including structure- and ligand-based methods. Briefly, computer-aided drug design uses computational chemistry to discover, enhance, or study drugs and related biologically active molecules. In this seminar, the students will independently acquire knowledge about topics in the context of structural bioinformatics. Topics include homology modelling, target assessment, molecular docking, in-silico screening (molecular fingerprints, chemical similarity), ADME and toxicity predictions (QSAR, machine learning), and more.

The students can select a topic from the presented drug development pipeline and (under guidance) will collect material (papers, data and algorithms). At the end of the seminar, they will present the topic as well as an application of such.

It is advisable/helpful (but not mandatory) to attend the practical course ‘Using open source software and libraries for data analysis and computer-aided drug design’ (Volkamer, WiSe 2017/18, block seminar at the end of february) or ‘Current questions of structural bioinformatics’ (Preissner/Banerjee) before.

The set-up of the course will depend on the number of attending students. Preferably, we will have a bi-weekly meeting (half-day) till mid-June, followed by a weekly presentation round (3 dates à 3 hours) till the end of the semester.

More details will be discussed in a preliminary meeting ( End of March).

First date: Thursday, April 18th 2019, 9-11:30 at Charité Campus, Mitte.

Additional information

For more information see: AG Volkamer - Teaching

Additional appointments

Appointment series

Advanced Biometrical Methods

LV: 60101901

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2 SWS

Geraldine Rauch

Lecture

Submod: 0262bB3.1.1

Akt: 03.07.2023 09:16

Thu, 14:00 - 16:00 (T9/049 Seminarraum)

Practice seminar for Advanced Biometrical Methods

LV: 60101902

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1 SWS

Geraldine Rauch

Practice seminar

Submod: 0262bB3.1.3

Akt: 03.07.2023 09:16

Thu, 16:00 - 17:00 (T9/049 Seminarraum)

Statistical Methods for Small Sample Sizes

LV: 60102301

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2 SWS

Frank Konietschke

Lecture

Submod: 0262bB3.1.1

Akt: 03.07.2023 09:16

Wed, 14:00 - 16:00 (A6/SR 025/026 Seminarraum)

Description

In this course, we introduce and discuss statistical inference methods for analyzing trials with small sample sizes. We hereby explore the impact of the standard assumption “N is large” and try to find an answer to the question “what means large?” The inference methods will cover estimation of treatment effects, confidence interval computations and hypothesis testing in both parametric and nonparametric models. Rank tests, bootstrap and permutation methods will be investigated in detail as approximation methods. This class aspires to learn about modern statistical tools that were designed to make accurate conclusions when sample sizes are rather small.

Additional appointments

Appointment series

A6/SR 025/026 Seminarraum

Frank Konietschke

einmal, ab 10.04.2019, 14:00 - 16:00 (13 Termine)

Practice seminar for Statistical Methods for Small Sample Sizes

LV: 60102302

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1 SWS

Frank Konietschke

Practice seminar

Submod: 0262bB3.1.3

Akt: 03.07.2023 09:16

Wed, 16:00 - 17:00 (A6/SR 025/026 Seminarraum)

Module: Forschungsmodul B (0262bB3.2)

Reaction Diffusion Simulation

LV: 19402311

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2 SWS

Frank Noe

Christoph Wehmeyer

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Mon, 10:00 - 16:00 (A6/030 Rechnerpoolraum)

Description

Content:

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/K 040 Multimediaraum

Knut Reinert

einmal, ab 08.04.2019, 14:00 - 16:00 (12 Termine)

Compact Data Structures

LV: 19404211

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Fri, 10:00 - 12:00 (T9/049 Seminarraum)

Description

References

Gonzalo Navarro: Compact data structures, Cambridge University Press

Additional appointments

Appointment series

T9/049 Seminarraum

Knut Reinert

einmal, ab 12.04.2019, 10:00 - 12:00 (13 Termine)

Introduction to Computational Proteomics

LV: 19404511

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2 SWS

Chris Bielow

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Fri, 12:00 - 14:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

This seminar will cover central aspects of modern bottom-up proteome analysis by mass spectrometry with a focus on bioinformatic algorithms and data analysis.

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Chris Bielow

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

Methods for Genome Analysis

LV: 19404711

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2 SWS

Birte Katharina Kehr

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Wed, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Computational Meta-Omics

LV: 19404811

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2 SWS

Thilo Muth

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Wed, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Description

Additional appointments

Appointment series

A6/SR 031 Seminarraum

Thilo Muth

einmal, ab 17.04.2019, 14:00 - 18:00 (7 Termine)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221a

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2 SWS

Irmtraud Meyer

Lecture

Submod: 0262bB3.1.1

Akt: 03.07.2023 09:16

Mon, 09:00 - 17:00 (T9/049 Seminarraum)

Mon, 09:00 - 17:00 (A6/SR 031 Seminarraum)

Description

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

T9/049 Seminarraum

Irmtraud Meyer

einmal, ab 25.03.2019, 09:00 - 17:00 (5 Termine)

T9/049 Seminarraum

Irmtraud Meyer

einmal, ab 01.04.2019, 09:00 - 17:00 (3 Termine)

A6/SR 031 Seminarraum

Irmtraud Meyer

einmal, ab 04.03.2019, 09:00 - 17:00 (4 Termine)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221b

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1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 03.07.2023 09:16

Description

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221c

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Description

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Computer-aided Drug Design - Methods and Application

LV: 60101711

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2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Description

More details will be discussed in a preliminary meeting ( End of March).

First date: Thursday, April 18th 2019, 9-11:30 at Charité Campus, Mitte.

Additional information

For more information see: AG Volkamer - Teaching

Additional appointments

Appointment series

Advanced Biometrical Methods

LV: 60101901

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2 SWS

Geraldine Rauch

Lecture

Submod: 0262bB3.1.1

Akt: 03.07.2023 09:16

Thu, 14:00 - 16:00 (T9/049 Seminarraum)

Practice seminar for Advanced Biometrical Methods

LV: 60101902

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1 SWS

Geraldine Rauch

Practice seminar

Submod: 0262bB3.1.3

Akt: 03.07.2023 09:16

Thu, 16:00 - 17:00 (T9/049 Seminarraum)

Statistical Methods for Small Sample Sizes

LV: 60102301

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2 SWS

Frank Konietschke

Lecture

Submod: 0262bB3.1.1

Akt: 03.07.2023 09:16

Wed, 14:00 - 16:00 (A6/SR 025/026 Seminarraum)

Description

Additional appointments

Appointment series

A6/SR 025/026 Seminarraum

Frank Konietschke

einmal, ab 10.04.2019, 14:00 - 16:00 (13 Termine)

Practice seminar for Statistical Methods for Small Sample Sizes

LV: 60102302

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1 SWS

Frank Konietschke

Practice seminar

Submod: 0262bB3.1.3

Akt: 03.07.2023 09:16

Wed, 16:00 - 17:00 (A6/SR 025/026 Seminarraum)

General Professional Skills

ABV Bioinformatik (0261a_m30)

Module: Legal Aspects of Computer Science (0159cA2.4)

Basics of Data Protection Law

LV: 19307201

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2 SWS

Philip Scholz

Lecture

Submod: 0159cA2.4.1

Akt: 03.07.2023 09:16

Wed, 16:00 - 18:00 (T9/SR 006 Seminarraum)

Description

Content

The lecture is to provide the students with a first structured overview of the German and European Data Protection Law based on the EU General Data Protection Regulation (GDPR). Furthermore, current topics on data protection are being discussed in depth.

Overview of the topics

Historiy of data protection and privacy
European and constitutional legal background
Legislative framework: General Data Protection Regulation, Federal Data Protection Act, sector-specific data protection law
Basic concepts and scope
Principles relating to processing of personal data and lawfulness of processing
Rights of the data subject
Data protection by design and by default, security of processing, data protection impact assessment
Enforcement of data protection law: supervisory system, sanctions
Focal points: big data, profiling, social networks, smart video surveillance, processing in the context of employment

Additional information

The exact date will be announced.

Additional appointments

Appointment series

T9/SR 006 Seminarraum

Philip Scholz

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

Practice seminar for Basics of data protection law

LV: 19307202

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2 SWS

Philip Scholz

Practice seminar

Submod: 0159cA2.4.2

Akt: 03.07.2023 09:16

Wed, 18:00 - 19:00 (T9/SR 006 Seminarraum)

Module: Planning, Implementing and Analysing a Tutorial in Computer Science (0159cA2.5)

Planning, Realisation and Analysis of a Tutorial

LV: 19302613

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2 SWS

No lecturers

Lab Seminar

Submod: 0159cA2.5.1

Akt: 03.07.2023 09:16

Description

Content

In a preparatory colloquium, current teaching methods and advising for tutors are presented and discussed. This colloquium is specifically for students, which particularly want to guide exercise sessions as a tutor for the mathematics and computer science students. An interview with the selection committee will take place even during the holidays, in which will be decided about the suitability as a tutor.

After successful aptitude assessment a tutorial about a subjects of a lecture of the first four semesters bachelor study, should be prepare, expose, documented and analyzed.

References

Seifert, J. W.: Visualisieren Präsentieren Moderieren. GABAL Verlag, 16. Auflage 2001

Additional information

Time and location by appointment.

Additional appointments

Appointment series

Module: System Administration (0159cA2.7)

System Administration

LV: 19302201

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2 SWS

Rolf Dietze

Lecture

Submod: 0159cA2.7.1

Akt: 03.07.2023 09:16

Mon, 10:00 - 12:00 (T9/046 Seminarraum)

Description

shell scripting from the viewpoint of system administration
planning and setting up a computer system while taking availability and maintainability into consideration (RAS-conditions)
redundancy in networking and storage
planning and setting up a redundant storage system (Raid-technologies and management)
system administration, security and user management, accounting and logging
managing configuration files and documentation
backups - strategies and technologies
planning and realization of networkwide services and resources (e.g. file services, print services, network information services)
implementation on different platforms (AIX, Solaris)
partitioning, virtualization and resource management on modern systems supporting logical partitioning
virtualization and resource management at the operating systems level (workload partitions, zones, jails)
qualitative comparison of partitioning and virtualization techniques on PowerPC and Sparc based UNI*-systems.
delegation of administration tasks with rolebased access (RBAC)
ethical and legal aspects when dealing with administrative privileges,
special aspects and procedures when dealing with personal information and security clearances when dealing with vital systems

At the beginning of the class, we will refresh the necessary knowledge to participate in the practical exercises and we will set up a working environment in the context of the administration of a heterogeneous computer network. Previous experience is desirable.

Additional information

The class will be taught as a block course, from 26.9. to 14.10.2016, daily from 10:00 to 18:00. Details will be announced in due time.

Additional appointments

Appointment series

T9/046 Seminarraum

Rolf Dietze

einmal, ab 09.09.2019, 10:00 - 12:00 (15 Termine)

Internship for System Administration

LV: 19302230

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3 SWS

Rolf Dietze

Internship

Submod: 0159cA2.7.2

Akt: 03.09.2019 16:00

Sat, 09:00 - 18:00 (T9/046 Seminarraum)

Mon, 12:00 - 18:00 (T9/046 Seminarraum)

Module: Berufspraktikum (0261aA2.1)

Bioinformatics Internship

LV: 19402433

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0 SWS

No lecturers

Professional Internship

Submod: 0261aA2.1.1

Akt: 03.07.2023 09:16

Module: Principles of Business Administration (0105cA4.1)

Betriebswirtschaftliche Grundlagen (ABV)

LV: 109001

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4 SWS

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

Seminar

Submod: 0105cA4.1.1

Akt: 03.07.2023 09:16

Tue, 10:00 - 12:00 (Hs 104a Hörsaal)

Tue, 12:00 - 14:00 (Hs 102 Hörsaal)

Tue, 14:00 - 16:00 (Hs 103 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 104a Hörsaal

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

Hs 102 Hörsaal

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

Hs 103 Hörsaal

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

einmal, ab 09.04.2019, 14:00 - 16:00 (14 Termine)

Module: Principles of Marketing (0105cA4.2)

Marketing-Grundlagen (ABV)

LV: 109003

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4 SWS

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

Seminar

Submod: 0105cA4.2.1

Akt: 03.07.2023 09:16

Wed, 10:00 - 12:00 (Hs 105 Hörsaal)

Fri, 10:00 - 14:30 (Hs 104a Hörsaal)

Wed, 12:00 - 14:00 (Hs 105 Hörsaal)

Wed, 14:00 - 16:00 (Hs 105 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 105 Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 08.05.2019, 10:00 - 12:00 (12 Termine)

Hs 104a Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 10.05.2019, 10:00 - 14:30 (4 Termine)

Hs 105 Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 08.05.2019, 12:00 - 14:00 (12 Termine)

Hs 105 Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 08.05.2019, 14:00 - 16:00 (12 Termine)

Module: E-Business (0105cA4.3)

E-Business (ABV)

LV: 109020

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4 SWS

Martin Gersch

Lars Stegemann

Seminar

Submod: 0105cA4.3.1

Akt: 03.07.2023 09:16

Wed, 14:00 - 16:00 (Hs 104 Hörsaal)

Thu, 16:00 - 18:00 (Hs 104 Hörsaal)

Wed, 16:00 - 18:00 (Hs 104 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 104 Hörsaal

Martin Gersch

Lars Stegemann

einmal, ab 10.04.2019, 14:00 - 16:00 (13 Termine)

Hs 104 Hörsaal

Martin Gersch

Lars Stegemann

einmal, ab 11.04.2019, 16:00 - 18:00 (13 Termine)

Hs 104 Hörsaal

Martin Gersch

Lars Stegemann

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

Module: Principles of Business Administration (0105dA4.1)

Betriebswirtschaftliche Grundlagen (ABV)

LV: 109001

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4 SWS

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

Seminar

Submod: 0105cA4.1.1

Akt: 03.07.2023 09:16

Tue, 10:00 - 12:00 (Hs 104a Hörsaal)

Tue, 12:00 - 14:00 (Hs 102 Hörsaal)

Tue, 14:00 - 16:00 (Hs 103 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 104a Hörsaal

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

Hs 102 Hörsaal

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

Hs 103 Hörsaal

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

einmal, ab 09.04.2019, 14:00 - 16:00 (14 Termine)

Module: Principles of Marketing (0105dA4.2)

Marketing-Grundlagen (ABV)

LV: 109003

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4 SWS

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

Seminar

Submod: 0105cA4.2.1

Akt: 03.07.2023 09:16

Wed, 10:00 - 12:00 (Hs 105 Hörsaal)

Fri, 10:00 - 14:30 (Hs 104a Hörsaal)

Wed, 12:00 - 14:00 (Hs 105 Hörsaal)

Wed, 14:00 - 16:00 (Hs 105 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 105 Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 08.05.2019, 10:00 - 12:00 (12 Termine)

Hs 104a Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 10.05.2019, 10:00 - 14:30 (4 Termine)

Hs 105 Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 08.05.2019, 12:00 - 14:00 (12 Termine)

Hs 105 Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 08.05.2019, 14:00 - 16:00 (12 Termine)

Module: E-Business (0105dA4.3)

E-Business (ABV)

LV: 109020

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4 SWS

Martin Gersch

Lars Stegemann

Seminar

Submod: 0105cA4.3.1

Akt: 03.07.2023 09:16

Wed, 14:00 - 16:00 (Hs 104 Hörsaal)

Thu, 16:00 - 18:00 (Hs 104 Hörsaal)

Wed, 16:00 - 18:00 (Hs 104 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 104 Hörsaal

Martin Gersch

Lars Stegemann

einmal, ab 10.04.2019, 14:00 - 16:00 (13 Termine)

Hs 104 Hörsaal

Martin Gersch

Lars Stegemann

einmal, ab 11.04.2019, 16:00 - 18:00 (13 Termine)

Hs 104 Hörsaal

Martin Gersch

Lars Stegemann

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

ABV Bioinformatik (für Studierende, die nach der BSc STO/PO 2012 studieren) (0261b_m30)

Module: Principles of Business Administration (0105dA4.1)

Betriebswirtschaftliche Grundlagen (ABV)

LV: 109001

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4 SWS

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

Seminar

Submod: 0105cA4.1.1

Akt: 03.07.2023 09:16

Tue, 10:00 - 12:00 (Hs 104a Hörsaal)

Tue, 12:00 - 14:00 (Hs 102 Hörsaal)

Tue, 14:00 - 16:00 (Hs 103 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 104a Hörsaal

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

Hs 102 Hörsaal

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

Hs 103 Hörsaal

Martin Gersch

Catharina Werner

Marie-Charlotte Matthes

einmal, ab 09.04.2019, 14:00 - 16:00 (14 Termine)

Module: Principles of Marketing (0105dA4.2)

Marketing-Grundlagen (ABV)

LV: 109003

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4 SWS

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

Seminar

Submod: 0105cA4.2.1

Akt: 03.07.2023 09:16

Wed, 10:00 - 12:00 (Hs 105 Hörsaal)

Fri, 10:00 - 14:30 (Hs 104a Hörsaal)

Wed, 12:00 - 14:00 (Hs 105 Hörsaal)

Wed, 14:00 - 16:00 (Hs 105 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 105 Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 08.05.2019, 10:00 - 12:00 (12 Termine)

Hs 104a Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 10.05.2019, 10:00 - 14:30 (4 Termine)

Hs 105 Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 08.05.2019, 12:00 - 14:00 (12 Termine)

Hs 105 Hörsaal

Gunnar Mau

Michael Kleinaltenkamp

Catharina Werner

Manuel Schild

einmal, ab 08.05.2019, 14:00 - 16:00 (12 Termine)

Module: E-Business (0105dA4.3)

E-Business (ABV)

LV: 109020

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4 SWS

Martin Gersch

Lars Stegemann

Seminar

Submod: 0105cA4.3.1

Akt: 03.07.2023 09:16

Wed, 14:00 - 16:00 (Hs 104 Hörsaal)

Thu, 16:00 - 18:00 (Hs 104 Hörsaal)

Wed, 16:00 - 18:00 (Hs 104 Hörsaal)

Description

Zu den Kommentaren der Veranstaltung

Additional appointments

Appointment series

Hs 104 Hörsaal

Martin Gersch

Lars Stegemann

einmal, ab 10.04.2019, 14:00 - 16:00 (13 Termine)

Hs 104 Hörsaal

Martin Gersch

Lars Stegemann

einmal, ab 11.04.2019, 16:00 - 18:00 (13 Termine)

Hs 104 Hörsaal

Martin Gersch

Lars Stegemann

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

Module: Project Management in the Software Area (0261bA1.1)

Seminar for Software Project Management (SeqAn)

LV: 19401511

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1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 23.08.2022 11:05

Software Project Management (SeqAn)

LV: 19401513

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4 SWS

Knut Reinert

Hannes Hauswedell

Lab Seminar

Submod: 0261bA1.1.1

Akt: 11.03.2019 14:00

Tue, 10:00 - 18:00 (T9/SR 006 Seminarraum)

Description

Content:

In this internship algorithms for sequence analysis are implemented in the SeqAn software library, which is currently being developed in our research group. The contributions are graded on the basis of a written project report. The same module includes an accompanying seminar, which must also be attended by the participants of the internship. Target group:

This course is aimed at students of bioinformatics. The internships are awarded via a special registration procedure via the Bioinformatics Study Office (Ulrike Seyferth). Interested computer science students are treated subordinated.

Requirements:

Good knowledge in C/C++.

Information on the software internship can be found on the Bioinformatics homepage.

References

Literatur:

Wird in der Vorbesprechung ausgegeben.

Additional information

See German text version.

Additional appointments

Appointment series

T9/SR 006 Seminarraum

Knut Reinert

Hannes Hauswedell

einmal, ab 12.03.2019, 10:00 - 18:00 (4 Termine)

Seminar for Software Project Management (Synthetic Biology)

LV: 19402011

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1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 04.03.2019 20:00

Project Management in the Software Area (Synthetic Biology)

LV: 19402013

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4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 04.03.2019 20:00

Seminar for Software Project Management (Functional Genomics)

LV: 19402511

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1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 03.07.2023 09:16

Software Project Management (Functional Genomics)

LV: 19402513

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4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 03.07.2023 09:16

Description

Integrative analysis of next generation sequencing (NGS) data
One of the research questions in bioinformatics and regulatory genomics is to understand the principles of transcriptional regulation. Transcription factors are the main players of gene regulation. Another aspect accounts for the open chromatin which enables the binding of the transcription factors and the RNA Polymerase II. There are several experimental techniques which can determine the interaction of the regulatory proteins and the DNA, such as ChIP-seq. Combinatorical analysis of several experiments help us to understand the interplay of all these factors on regulatory elements in the genome. We will analyze ChIP-seq and RNA-seq data in various cell lines to model the TF binding and histone modifications across the genome with respect to gene expression of the neighbouring genes. Afterwards, we develop a statistical method to combine these data in an appropriate way. We will use both implemented tools and our own scripts to obtain suitable results. Students will work in groups of 3 and present their work at the end of the seminar.

Additional information

The allocation of seats takes place every year in February.

Additional appointments

Appointment series

Seminar for Software Project Management (OpenMS)

LV: 19403411

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1 SWS

Chris Bielow

Seminar

Submod: 0261bA1.1.2

Akt: 03.07.2023 09:16

Fri, 14:00 - 16:00 (A3/SR 210 Seminarraum)

Mon, 10:00 - 12:00 (T9/051 Seminarraum)

Software Project Management (OpenMS)

LV: 19403413

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4 SWS

Chris Bielow

Lab Seminar

Submod: 0261bA1.1.1

Akt: 03.07.2023 09:16

Fri, 10:00 - 12:00 (T9/K 040 Multimediaraum)

Description

The aim of this project is the implementation of algorithms for the analysis of mass spectrometry data within the software library OpenMS. The implemented components will be integrated into complex analysis pipelines of proteomics or metabolomics data/

We will explore elements of software development, i.e. version control (git), class tests, continuous integration, working in teams.

Good C++ programming skills are required.

Additional information

The distribution of places takes place every year in February.

Additional appointments

Appointment series

T9/K 040 Multimediaraum

Chris Bielow

einmal, ab 12.04.2019, 10:00 - 12:00 (13 Termine)

Seminar for Software Project Management (Preißner)

LV: 60100311

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1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 11.03.2019 12:00

Software Project Management (Preißner)

LV: 60100313

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4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 11.03.2019 12:00

Module: Legal Aspects of Computer Science (0159cA2.4)

Basics of Data Protection Law

LV: 19307201

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2 SWS

Philip Scholz

Lecture

Submod: 0159cA2.4.1

Akt: 03.07.2023 09:16

Wed, 16:00 - 18:00 (T9/SR 006 Seminarraum)

Description

Content

Overview of the topics

Historiy of data protection and privacy
European and constitutional legal background
Legislative framework: General Data Protection Regulation, Federal Data Protection Act, sector-specific data protection law
Basic concepts and scope
Principles relating to processing of personal data and lawfulness of processing
Rights of the data subject
Data protection by design and by default, security of processing, data protection impact assessment
Enforcement of data protection law: supervisory system, sanctions
Focal points: big data, profiling, social networks, smart video surveillance, processing in the context of employment

Additional information

The exact date will be announced.

Additional appointments

Appointment series

T9/SR 006 Seminarraum

Philip Scholz

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

Practice seminar for Basics of data protection law

LV: 19307202

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2 SWS

Philip Scholz

Practice seminar

Submod: 0159cA2.4.2

Akt: 03.07.2023 09:16

Wed, 18:00 - 19:00 (T9/SR 006 Seminarraum)

Module: Planning, Implementing and Analysing a Tutorial in Computer Science (0159cA2.5)

Planning, Realisation and Analysis of a Tutorial

LV: 19302613

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2 SWS

No lecturers

Lab Seminar

Submod: 0159cA2.5.1

Akt: 03.07.2023 09:16

Description

Content

After successful aptitude assessment a tutorial about a subjects of a lecture of the first four semesters bachelor study, should be prepare, expose, documented and analyzed.

References

Seifert, J. W.: Visualisieren Präsentieren Moderieren. GABAL Verlag, 16. Auflage 2001

Additional information

Time and location by appointment.

Additional appointments

Appointment series

Module: System Administration (0159cA2.7)

System Administration

LV: 19302201

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2 SWS

Rolf Dietze

Lecture

Submod: 0159cA2.7.1

Akt: 03.07.2023 09:16

Mon, 10:00 - 12:00 (T9/046 Seminarraum)

Description

shell scripting from the viewpoint of system administration
planning and setting up a computer system while taking availability and maintainability into consideration (RAS-conditions)
redundancy in networking and storage
planning and setting up a redundant storage system (Raid-technologies and management)
system administration, security and user management, accounting and logging
managing configuration files and documentation
backups - strategies and technologies
planning and realization of networkwide services and resources (e.g. file services, print services, network information services)
implementation on different platforms (AIX, Solaris)
partitioning, virtualization and resource management on modern systems supporting logical partitioning
virtualization and resource management at the operating systems level (workload partitions, zones, jails)
qualitative comparison of partitioning and virtualization techniques on PowerPC and Sparc based UNI*-systems.
delegation of administration tasks with rolebased access (RBAC)
ethical and legal aspects when dealing with administrative privileges,
special aspects and procedures when dealing with personal information and security clearances when dealing with vital systems

Additional information

The class will be taught as a block course, from 26.9. to 14.10.2016, daily from 10:00 to 18:00. Details will be announced in due time.

Additional appointments

Appointment series

T9/046 Seminarraum

Rolf Dietze

einmal, ab 09.09.2019, 10:00 - 12:00 (15 Termine)

Internship for System Administration

LV: 19302230

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3 SWS

Rolf Dietze

Internship

Submod: 0159cA2.7.2

Akt: 03.09.2019 16:00

Sat, 09:00 - 18:00 (T9/046 Seminarraum)

Mon, 12:00 - 18:00 (T9/046 Seminarraum)

Module: Professional Internship (0261bA3.1)

Bioinformatics Internship

LV: 19402433

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0 SWS

No lecturers

Professional Internship

Submod: 0261aA2.1.1

Akt: 03.07.2023 09:16

Gesamtes Lehrangebot der Bioinformatik

Gesamtes Lehrangebot der Bioinformatik (E61a)

Module: Gesamtes Lehrangebot der Bioinformatik (E61aA1.1)

Computer-oriented Mathematics II

LV: 19211901

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2 SWS

Carsten Gräser

Lecture

Submod: 0260bA2.4.1

Akt: 11.06.2019 12:00

Fri, 12:00 - 14:00 (T9/Gr. Hörsaal)

Description

Inhalt:

Die Auswahl der behandelten numerischen Verfahren enthält Polynominterpolation, Newton-Cotes-Formeln zur numerische Integration und Euler-Verfahren für lineare Differentialgleichungen.

Additional information

Studierende der Mathematik (Monobachelor und Lehramt) und Bioinformatik, sowie Numerikinteressierte aus Physik, Informatik und anderen Natur- und Geisteswissenschaften.

Additional appointments

Klausur

Hs 1a Hörsaal

Carsten Gräser

12.07.2019 12:00 - 15:00

Nachklausur

HFB/B Hörsaal

Carsten Gräser

30.09.2019 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Carsten Gräser

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

Practice seminar for Computer-oriented Mathematics II

LV: 19211902

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2 SWS

Xingjian Zhang-Schneider

Carsten Gräser

Practice seminar

Submod: 0260bA2.4.2

Akt: 15.08.2019 12:00

Tue, 12:00 - 14:00 (A6/SR 009 Seminarraum)

Thu, 10:00 - 12:00 (A3/SR 130 Seminarraum (Hinterhaus))

Tue, 12:00 - 14:00 (A6/SR 025/026 Seminarraum)

Thu, 12:00 - 14:00 (A6/SR 009 Seminarraum)

Thu, 10:00 - 12:00 (KöLu24-26/SR 006 Neuro/Mathe)

Thu, 12:00 - 14:00 (A7/SR 140 Seminarraum (Hinterhaus))

Tue, 12:00 - 14:00 (A3/SR 130 Seminarraum (Hinterhaus))

Tue, 12:00 - 14:00 (A3/SR 119)

Additional information

Studierende der Mathematik (Monobachelor und Lehramt) und Bioinformatik, sowie Numerikinteressierte aus Physik, Informatik und anderen Natur- und Geisteswissenschaften.

Additional appointments

Appointment series

A6/SR 009 Seminarraum

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

A3/SR 130 Seminarraum (Hinterhaus)

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 10:00 - 12:00 (13 Termine)

A6/SR 025/026 Seminarraum

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

A6/SR 009 Seminarraum

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 12:00 - 14:00 (13 Termine)

KöLu24-26/SR 006 Neuro/Mathe

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 10:00 - 12:00 (13 Termine)

A7/SR 140 Seminarraum (Hinterhaus)

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 11.04.2019, 12:00 - 14:00 (13 Termine)

A3/SR 130 Seminarraum (Hinterhaus)

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

A3/SR 119

Xingjian Zhang-Schneider

Carsten Gräser

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

Foundations of Theoretical Computer Science

LV: 19301201

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3 SWS

Klaus Kriegel

Lecture

Submod: 0086bA3.1.1

Akt: 08.05.2019 16:00

Wed, 10:00 - 12:00 (T9/Gr. Hörsaal)

Mon, 10:00 - 12:00 (T9/Gr. Hörsaal)

Description

Uwe Schöning, Theoretische Informatik kurzgefasst, 5. Auflage, Spektrum Akademischer Verlag, 2008
John E. Hopcroft, Rajeev Motwani, Jeffrey D. Ullman, Einführung in die Automatentheorie, Formale Sprachen und Komplexität, Pearson Studium, 3. Auflage, 2011
Ingo Wegener: Theoretische Informatik - Eine algorithmenorientierte Einführung, 2. Auflage, Teubner, 1999
Michael Sipser, Introduction to the Theory of Computation, 2nd ed., Thomson Course Technology, 2006
Wegener, Kompendium theoretische Informatik - Eine Ideensammlung, Teubner 1996

Additional appointments

Klausur

HFB/A Hörsaal

HFB/C Hörsaal

HFB/D Hörsaal

Klaus Kriegel

08.07.2019 14:00 - 16:00

Nachklausur

HFB/A Hörsaal

HFB/C Hörsaal

Klaus Kriegel

07.10.2019 10:00 - 12:00

Appointment series

T9/Gr. Hörsaal

Klaus Kriegel

einmal, ab 10.04.2019, 10:00 - 12:00 (13 Termine)

T9/Gr. Hörsaal

Klaus Kriegel

einmal, ab 08.04.2019, 10:00 - 12:00 (11 Termine)

Practice seminar for Foundations of Theoretical Computer Science

LV: 19301202

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2 SWS

Klaus Kriegel

Practice seminar

Submod: 0086bA3.1.2

Akt: 17.04.2019 12:00

Tue, 08:00 - 10:00 (T9/053 Seminarraum)

Tue, 16:00 - 18:00 (T9/051 Seminarraum)

Tue, 16:00 - 18:00 (T9/053 Seminarraum)

Tue, 14:00 - 16:00 (T9/053 Seminarraum)

Thu, 12:00 - 14:00 (T9/053 Seminarraum)

Fri, 14:00 - 16:00 (T9/049 Seminarraum)

Thu, 16:00 - 18:00 (T9/051 Seminarraum)

Thu, 16:00 - 18:00 (T9/053 Seminarraum)

Wed, 16:00 - 18:00 (T9/051 Seminarraum)

Tue, 14:00 - 16:00 (T9/046 Seminarraum)

Wed, 08:00 - 10:00 (T9/053 Seminarraum)

Fri, 12:00 - 14:00 (T9/051 Seminarraum)

Wed, 16:00 - 18:00 (T9/053 Seminarraum)

Additional appointments

Appointment series

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 08:00 - 10:00 (14 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 16:00 - 18:00 (14 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 16:00 - 18:00 (14 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 09.04.2019, 14:00 - 16:00 (14 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 11.04.2019, 12:00 - 14:00 (13 Termine)

T9/049 Seminarraum

Klaus Kriegel

einmal, ab 12.04.2019, 14:00 - 16:00 (13 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 11.04.2019, 16:00 - 18:00 (13 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 11.04.2019, 16:00 - 18:00 (13 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

T9/046 Seminarraum

Klaus Kriegel

einmal, ab 16.04.2019, 14:00 - 16:00 (13 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 10.04.2019, 08:00 - 10:00 (13 Termine)

T9/051 Seminarraum

Klaus Kriegel

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

T9/053 Seminarraum

Klaus Kriegel

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

Database Systems

LV: 19301501

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3 SWS

Agnès Voisard

Lecture

Submod: 0086bA3.3.1

Akt: 26.03.2019 16:00

Thu, 14:00 - 16:00 (T9/Gr. Hörsaal)

Tue, 14:00 - 16:00 (T9/Gr. Hörsaal)

Description

Content

Project: the topics are deepened in an implementation project for student groups.

References

Alfons Kemper, Andre Eickler: Datenbanksysteme - Eine Einführung, 5. Auflage, Oldenbourg 2004
R. Elmasri, S. Navathe: Grundlagen von Datenbanksystemen, Pearson Studium, 2005

Additional information

Requirements

ALP 1 - Functional Programming
ALP 2 - Object-oriented Programming
ALP 3 - Data structures and data abstractions
OR Informatik B

Additional appointments

Klausur

HFB/A Hörsaal

HFB/B Hörsaal

HFB/C Hörsaal

HFB/D Hörsaal

Agnès Voisard

11.07.2019 14:00 - 16:00

Nachklausur

HFB/A Hörsaal

HFB/B Hörsaal

HFB/C Hörsaal

HFB/D Hörsaal

Agnès Voisard

10.10.2019 14:00 - 16:00

Appointment series

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 11.04.2019, 14:00 - 16:00 (13 Termine)

T9/Gr. Hörsaal

Agnès Voisard

einmal, ab 09.04.2019, 14:00 - 16:00 (14 Termine)

Practice seminar for Database systems

LV: 19301502

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2 SWS

Nicolas Lehmann

Practice seminar

Submod: 0086bA3.3.2

Akt: 26.03.2019 16:00

Tue, 10:00 - 12:00 (T9/053 Seminarraum)

Wed, 12:00 - 14:00 (T9/053 Seminarraum)

Wed, 10:00 - 12:00 (T9/055 Seminarraum)

Fri, 14:00 - 16:00 (T9/055 Seminarraum)

Wed, 12:00 - 14:00 (T9/051 Seminarraum)

Mon, 08:00 - 10:00 (T9/053 Seminarraum)

Mon, 08:00 - 10:00 (T9/051 Seminarraum)

Wed, 12:00 - 14:00 (T9/055 Seminarraum)

Mon, 10:00 - 12:00 (T9/055 Seminarraum)

Mon, 16:00 - 18:00 (T9/051 Seminarraum)

Additional appointments

Appointment series

T9/053 Seminarraum

Nicolas Lehmann

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

T9/053 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 12:00 - 14:00 (13 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 10:00 - 12:00 (13 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 12.04.2019, 14:00 - 16:00 (13 Termine)

T9/051 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 12:00 - 14:00 (13 Termine)

T9/053 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 08:00 - 10:00 (12 Termine)

T9/051 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 08:00 - 10:00 (12 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 10.04.2019, 12:00 - 14:00 (13 Termine)

T9/055 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 10:00 - 12:00 (12 Termine)

T9/051 Seminarraum

Nicolas Lehmann

einmal, ab 08.04.2019, 16:00 - 18:00 (12 Termine)

Computer Science B

LV: 19302101

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4 SWS

Klaus Kriegel

Max Willert

Lecture

Submod: 0260cA1.2.1

Akt: 07.08.2019 08:00

Fri, 08:00 - 10:00 (T9/Gr. Hörsaal)

Wed, 08:00 - 10:00 (T9/Gr. Hörsaal)

Description

The class focuses on:

Fundations of programming: imperative and object-oriented programming
Algorithms and data structures: design and implementation of data structures
theory of algorithms

We use C++ as an implementation language.

Target Audience

Students with Computer Science as a minor concentration and students of bioinformatics.

References

Goodrich, Tamassia: Data Structures and Algorithms in C++
Stroustrup: Die C++ Programmiersprache
Cormen, Leiserson, Rivest, Stein: Introduction to Algorithms
Kleinberg, Tardos: Algorithm Design
Schöning: Algorithmen - kurz gefasst

Additional appointments

Klausur

Gr. Hörsaal (Raum B.001)

Klaus Kriegel

Max Willert

17.07.2019 16:00 - 18:00

T9/055 Seminarraum

Klaus Kriegel

Max Willert

21.08.2019 10:00 - 12:00

Nachklausur

T9/049 Seminarraum

T9/Gr. Hörsaal

Klaus Kriegel

Max Willert

01.10.2019 14:00 - 16:00

Appointment series

T9/Gr. Hörsaal

Klaus Kriegel

Max Willert

einmal, ab 12.04.2019, 08:00 - 10:00 (13 Termine)

T9/Gr. Hörsaal

Klaus Kriegel

Max Willert

einmal, ab 10.04.2019, 08:00 - 10:00 (14 Termine)

Exercise Computer Science B

LV: 19302102

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2 SWS

Klaus Kriegel

Max Willert

Practice seminar

Submod: 0260cA1.2.2

Akt: 30.03.2019 02:00

Tue, 10:00 - 12:00 (T9/SR 006 Seminarraum)

Wed, 14:00 - 16:00 (T9/049 Seminarraum)

Tue, 12:00 - 14:00 (T9/051 Seminarraum)

Fri, 10:00 - 12:00 (A7/SR 031)

Fri, 12:00 - 14:00 (T9/053 Seminarraum)

Tue, 08:00 - 10:00 (T9/055 Seminarraum)

Thu, 14:00 - 16:00 (T9/051 Seminarraum)

Additional appointments

Appointment series

T9/SR 006 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

T9/049 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 10.04.2019, 14:00 - 16:00 (13 Termine)

T9/051 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 09.04.2019, 12:00 - 14:00 (14 Termine)

A7/SR 031

Klaus Kriegel

Max Willert

einmal, ab 12.04.2019, 10:00 - 12:00 (13 Termine)

T9/053 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

T9/055 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 09.04.2019, 08:00 - 10:00 (14 Termine)

T9/051 Seminarraum

Klaus Kriegel

Max Willert

einmal, ab 11.04.2019, 14:00 - 16:00 (13 Termine)

Applied Sequence Analysis

LV: 19400313

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4 SWS

Sandro Andreotti

Lab Seminar

Submod: 0262bB2.2.1

Akt: 03.07.2023 09:16

Wed, 10:00 - 14:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

Goals:

Additional appointments

A6/017 Frontalunterrichtsraum (Bioinf)

Sandro Andreotti

12.07.2019 14:00 - 16:00

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Sandro Andreotti

einmal, ab 10.04.2019, 10:00 - 14:00 (13 Termine)

Bioinformatics Research Internship

LV: 19400432

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0 SWS

No lecturers

Research Internship

Submod: 0262bA1.6.1

Akt: 04.03.2019 12:00

Seminar for Software Project Management (SeqAn)

LV: 19401511

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1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 23.08.2022 11:05

Software Project Management (SeqAn)

LV: 19401513

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4 SWS

Knut Reinert

Hannes Hauswedell

Lab Seminar

Submod: 0261bA1.1.1

Akt: 11.03.2019 14:00

Tue, 10:00 - 18:00 (T9/SR 006 Seminarraum)

Description

Content:

Requirements:

Good knowledge in C/C++.

Information on the software internship can be found on the Bioinformatics homepage.

References

Literatur:

Wird in der Vorbesprechung ausgegeben.

Additional information

See German text version.

Additional appointments

Appointment series

T9/SR 006 Seminarraum

Knut Reinert

Hannes Hauswedell

einmal, ab 12.03.2019, 10:00 - 18:00 (4 Termine)

Sequence Analysis

LV: 19401601

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2 SWS

Knut Reinert

Lecture

Submod: 0262bB1.5.1

Akt: 03.07.2023 09:16

Tue, 10:00 - 12:00 (T9/051 Seminarraum)

Description

Goals:

Some examples of subjects that will be more deeply discussed:

Paradigms for approximative, semiglobal alignments (read mapping)
Methods for genomic assembly and metagenomic assembly
Methods for the identification of genetic variants (SNVs, SNPs, CNVs) - algorithmic problems of quantifying expession using NGS data

For further information go to: https://kvv.imp.fu-berlin.de/portal/

Additional information

Compulsory optional subject in bioinformatics.

Additional appointments

Appointment series

T9/051 Seminarraum

Knut Reinert

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

Practice seminar for Sequence Analysis

LV: 19401602

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2 SWS

Knut Reinert

Practice seminar

Submod: 0262bB1.5.2

Akt: 03.07.2023 09:16

Thu, 12:00 - 14:00 (T9/049 Seminarraum)

Seminar for Sequence Analysis

LV: 19401611

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB1.5.3

Akt: 03.07.2023 09:16

Fri, 14:00 - 16:00 (A3/ 024 Seminarraum )

Network Analysis

LV: 19401701

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2 SWS

Alexander Bockmayr

Martin Vingron

Lecture

Submod: 0262bB1.3.1

Akt: 04.06.2019 10:00

Thu, 10:00 - 12:00 (A6/SR 032 Seminarraum)

Description

Contents:

References

Literatur

wird in der Veranstaltung bekanntgegeben.

Additional appointments

Zusatztermin

A6/SR 032 Seminarraum

Alexander Bockmayr

Martin Vingron

13.06.2019 08:00 - 10:00

Klausur

Hs A (Raum B.006, 200 Pl.)

Alexander Bockmayr

Martin Vingron

12.07.2019 10:00 - 12:00

Appointment series

A6/SR 032 Seminarraum

Alexander Bockmayr

Martin Vingron

einmal, ab 11.04.2019, 10:00 - 12:00 (13 Termine)

Practice seminar for Network Analysis

LV: 19401702

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2 SWS

Alexander Bockmayr

Martin Vingron

Markus Arthur Köbis

Practice seminar

Submod: 0262bB1.3.2

Akt: 20.03.2019 16:00

Fri, 10:00 - 12:00 (T9/046 Seminarraum)

Seminar for Network Analysis

LV: 19401711

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2 SWS

Alexander Bockmayr

Martin Vingron

Seminar

Submod: 0262bB1.3.3

Akt: 04.03.2019 12:00

Fri, 12:00 - 14:00 (T9/046 Seminarraum)

Seminar for Software Project Management (Synthetic Biology)

LV: 19402011

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1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 04.03.2019 20:00

Project Management in the Software Area (Synthetic Biology)

LV: 19402013

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4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 04.03.2019 20:00

Mathematics for Bioinformaticians II

LV: 19402201

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4 SWS

Alexander Bockmayr

Heike Siebert

Lecture

Submod: 0260cA2.2.1

Akt: 03.07.2023 09:16

Wed, 10:00 - 12:00 (A3/Hs 001 Hörsaal)

Tue, 14:00 - 16:00 (A3/Hs 001 Hörsaal)

Description

number systems: from natural numbers to real numbers, completeness property of the reals
polynomials: roots of polynomials, polynomial interpolation, rational functions
special functions: exponential function, logarithm, trigonometric functions
complex numbers: exponential function for complex numbers, complex roots
convergence of sequences and series, convergence of functions, continuous functions
differential calculus: derivative of a function, interpretations and applications of the derivative
intergral calculus: definite and indefinite integrals, fundamental theorem of calculus, applications
power series
Taylor series
basics of differential calculus for multivariate functions: partial derivative, gradient, Jacobi matrix
solution of simple differential equations

References

Kurt Meyberg, Peter Vachenauer: Höhere Mathematik 1, Springer-Verlag, 6.Auflage 2001
Dirk Hachenberger: Mathematik für Informatiker, Pearson 2005
Gerhard Berendt: Mathematische Grundlagen der Informatik, Band 2, B.I.-Wissenschaftsverlag; 1990
Thomas Westermann: Mathematik für Ingenieure mit Maple 1, Springer-Verlag, 4.Auflage 2005

Additional information

Target group:

Students of Bioinformatics (BSc, second semester)

Requirements:

Mathematik für Bioinformatiker I

Additional appointments

Nachklausur

Hs A (Raum B.006, 200 Pl.)

Alexander Bockmayr

Heike Siebert

31.07.2019 10:00 - 12:00

Appointment series

A3/Hs 001 Hörsaal

Alexander Bockmayr

Heike Siebert

einmal, ab 10.04.2019, 10:00 - 12:00 (13 Termine)

A3/Hs 001 Hörsaal

Alexander Bockmayr

Heike Siebert

einmal, ab 09.04.2019, 14:00 - 16:00 (14 Termine)

Practice seminar for Mathematics for Bioinformaticians II

LV: 19402202

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2 SWS

Heike Siebert

Alexander Bockmayr

Katinka Becker

Practice seminar

Submod: 0260cA2.2.2

Akt: 03.07.2023 09:16

Fri, 12:00 - 14:00 (T9/049 Seminarraum)

Fri, 10:00 - 12:00 (T9/053 Seminarraum)

Wed, 14:00 - 16:00 (T9/046 Seminarraum)

Additional appointments

Appointment series

T9/049 Seminarraum

Heike Siebert

Alexander Bockmayr

Katinka Becker

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

T9/053 Seminarraum

Heike Siebert

Alexander Bockmayr

Katinka Becker

einmal, ab 12.04.2019, 10:00 - 12:00 (13 Termine)

T9/046 Seminarraum

Heike Siebert

Alexander Bockmayr

Katinka Becker

einmal, ab 10.04.2019, 14:00 - 16:00 (13 Termine)

Reaction Diffusion Simulation

LV: 19402311

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2 SWS

Frank Noe

Christoph Wehmeyer

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Mon, 10:00 - 16:00 (A6/030 Rechnerpoolraum)

Description

Content:

Please sign up on the KVV pages (open "Site Browser" and look forJournal Club).

References

aktuelle Publikationen aus der Forschung

Additional information

Open for:

Master and PhD students

Additional appointments

Appointment series

T9/K 040 Multimediaraum

Knut Reinert

einmal, ab 08.04.2019, 14:00 - 16:00 (12 Termine)

Seminar for Software Project Management (OpenMS)

LV: 19403411

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1 SWS

Chris Bielow

Seminar

Submod: 0261bA1.1.2

Akt: 03.07.2023 09:16

Fri, 14:00 - 16:00 (A3/SR 210 Seminarraum)

Mon, 10:00 - 12:00 (T9/051 Seminarraum)

Software Project Management (OpenMS)

LV: 19403413

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4 SWS

Chris Bielow

Lab Seminar

Submod: 0261bA1.1.1

Akt: 03.07.2023 09:16

Fri, 10:00 - 12:00 (T9/K 040 Multimediaraum)

Description

We will explore elements of software development, i.e. version control (git), class tests, continuous integration, working in teams.

Good C++ programming skills are required.

Additional information

The distribution of places takes place every year in February.

Additional appointments

Appointment series

T9/K 040 Multimediaraum

Chris Bielow

einmal, ab 12.04.2019, 10:00 - 12:00 (13 Termine)

Practical Course: Applied Machine Learning

LV: 19403613

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4 SWS

Tim Conrad

Bernhard Renard

Lab Seminar

Submod: 0262bB2.2.1

Akt: 03.07.2023 09:16

Mon, 10:00 - 14:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

Goals:

Content:

Pre-processing of biological data and model implementation with R
Classification metrics and permutation approaches
Linear Models for Regression and Classification
Kernel Methods for Regression and Classification - Feature Selection
Semi-supervised learning / active learning
Classification trees and Random Forests
Graphical models

For further information see: http://medicalbioinformatics.de/teaching/item/applied-machine-learning-ss19

Additional information

Prerequisites:

Attended the Statistics course from the Master in Bioinformatics FU (or equivalent)

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Tim Conrad

Bernhard Renard

einmal, ab 08.04.2019, 10:00 - 14:00 (12 Termine)

Compact Data Structures

LV: 19404211

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2 SWS

Knut Reinert

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Fri, 10:00 - 12:00 (T9/049 Seminarraum)

Description

References

Gonzalo Navarro: Compact data structures, Cambridge University Press

Additional appointments

Appointment series

T9/049 Seminarraum

Knut Reinert

einmal, ab 12.04.2019, 10:00 - 12:00 (13 Termine)

Introduction to Computational Proteomics

LV: 19404511

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2 SWS

Chris Bielow

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Fri, 12:00 - 14:00 (A6/017 Frontalunterrichtsraum (Bioinf))

Description

This seminar will cover central aspects of modern bottom-up proteome analysis by mass spectrometry with a focus on bioinformatic algorithms and data analysis.

Additional appointments

Appointment series

A6/017 Frontalunterrichtsraum (Bioinf)

Chris Bielow

einmal, ab 12.04.2019, 12:00 - 14:00 (13 Termine)

Methods for Genome Analysis

LV: 19404711

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2 SWS

Birte Katharina Kehr

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Wed, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Computational Meta-Omics

LV: 19404811

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2 SWS

Thilo Muth

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Wed, 14:00 - 18:00 (A6/SR 031 Seminarraum)

Description

Additional appointments

Appointment series

A6/SR 031 Seminarraum

Thilo Muth

einmal, ab 17.04.2019, 14:00 - 18:00 (7 Termine)

Biochemie I - Grundlagen der Biochemie

LV: 21601a

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2 SWS

Markus Wahl

Florian Heyd

Helge Ewers

Lecture

Submod: 0260cA3.3.1

Akt: 03.07.2023 09:16

Wed, 12:00 - 14:00 (Hs Anorganik)

Description

Additional information

Vorbesprechung Di, 09.04.19, 12:00 - 14.00 Uhr, Hs, AC, Fabeckstr. 34-36

Additional information for students

entspricht Molekularbiologie und Biochemie I für Bioinformatiker.

Additional appointments

VORBESPRECHUNG 21601 Grundlagen der Biochemie

Hs Anorganik

Markus Wahl

Florian Heyd

Helge Ewers

09.04.2019 12:00 - 14:00

Repetitorium: 21601 - BC I - Grundlagen der Biochemie

Hs Anorganik

Markus Wahl

Florian Heyd

Helge Ewers

12.07.2019 12:00 - 14:00

Klausur: 21601 - BC I (Zusätzliche Hs)

Hs A (Raum B.006, 200 Pl.)

Hs B (Raum B.004, 100 Pl.)

Markus Wahl

Florian Heyd

Helge Ewers

19.07.2019 14:00 - 16:00

Nachklausur: 21601 (zusätzliche Hs)

Hs A (Raum B.006, 200 Pl.)

Hs B (Raum B.004, 100 Pl.)

Markus Wahl

Florian Heyd

Helge Ewers

18.09.2019 10:00 - 12:00

Appointment series

Hs Anorganik

Markus Wahl

Florian Heyd

Helge Ewers

einmal, ab 10.04.2019, 12:00 - 14:00 (13 Termine)

Übungen zur Biochemie I - Grundlagen der Biochemie

LV: 21601b

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2 SWS

Markus Wahl

Florian Heyd

Helge Ewers

Practice seminar

Submod: 0260cA3.3.2

Akt: 03.07.2023 09:16

Tue, 12:00 - 14:00 (SR 23.02 SR 34.16/17Hs KristallographieSR 33.02)

Wed, 08:00 - 10:00 (Hs Kristallographie)

Wed, 10:00 - 12:00 (SR 33.03 SR 34.16/17)

Description

Additional information

Additional appointments

Appointment series

SR 23.02

SR 34.16/17

Hs Kristallographie

SR 33.02

Markus Wahl

Florian Heyd

Helge Ewers

einmal, ab 16.04.2019, 12:00 - 14:00 (13 Termine)

Hs Kristallographie

Markus Wahl

Florian Heyd

Helge Ewers

einmal, ab 17.04.2019, 08:00 - 10:00 (12 Termine)

SR 33.03

SR 34.16/17

Markus Wahl

Florian Heyd

Helge Ewers

einmal, ab 17.04.2019, 10:00 - 12:00 (12 Termine)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221a

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2 SWS

Irmtraud Meyer

Lecture

Submod: 0262bB3.1.1

Akt: 03.07.2023 09:16

Mon, 09:00 - 17:00 (T9/049 Seminarraum)

Mon, 09:00 - 17:00 (A6/SR 031 Seminarraum)

Description

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

T9/049 Seminarraum

Irmtraud Meyer

einmal, ab 25.03.2019, 09:00 - 17:00 (5 Termine)

T9/049 Seminarraum

Irmtraud Meyer

einmal, ab 01.04.2019, 09:00 - 17:00 (3 Termine)

A6/SR 031 Seminarraum

Irmtraud Meyer

einmal, ab 04.03.2019, 09:00 - 17:00 (4 Termine)

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221b

a.SAP verarbeitet

1 SWS

No lecturers

Practice seminar

Submod: 0262bB3.1.3

Akt: 03.07.2023 09:16

Description

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Methods for investigating the RNA structurome and RNA-RNA interactome

LV: 216221c

a.SAP verarbeitet

2 SWS

No lecturers

Seminar

Submod: 0262bB3.1.5

Akt: 03.07.2023 09:16

Description

References

C.K. Kwok (2016): Dawn of the in vivo RNA structurome and interactome J.G. Aw (2016): In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Additional information for students

Additional appointments

Appointment series

Molekularbiologie und Biochemie III

LV: 21699a

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2 SWS

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

Lecture

Submod: 0260cA3.5.1

Akt: 03.07.2023 09:16

Fri, 10:00 - 12:00 (Hörsaal/Thielallee 67)

Additional information

Additional information for students

Vorlesung für Studierende der Bioinformatik

Additional appointments

Klausur - Molekularbiologie und Biochemie III für Bioinformatiker

Hörsaal/Thielallee 67

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

19.07.2019 10:00 - 12:00

Nachklausur - Molekularbiologie und Biochemie III für Bioinformatiker

Hörsaal/Thielallee 67

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

11.10.2019 10:00 - 12:00

Appointment series

Hörsaal/Thielallee 67

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

einmal, ab 12.04.2019, 10:00 - 12:00 (13 Termine)

Übungen zu Molekularbiologie und Biochemie III

LV: 21699b

a.SAP verarbeitet

2 SWS

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

Practice seminar

Submod: 0260cA3.5.2

Akt: 03.07.2023 09:16

Wed, 14:00 - 16:00 (Hörsaal/Thielallee 67)

Additional information

Additional information for students

Übungen zu 21699a für Studierende der Bioinformatik

Additional appointments

Hörsaal/Thielallee 67

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

22.05.2019 12:00 - 14:00

Appointment series

Hörsaal/Thielallee 67

Sigmar Stricker

Sutapa Chakrabarti

Tobias Stauber

Ursula Neu

einmal, ab 17.04.2019, 14:00 - 16:00 (11 Termine)

Biodiversität und Evolution/ Biodiversity and Evolution (V)

LV: 23779a

a.SAP verarbeitet

2 SWS

No lecturers

Lecture

Submod: 0262bB1.1.1

Akt: 03.07.2023 09:16

Biodiversität und Evolution / Biodiversity and Evolution (Ü)

LV: 23779b

a.SAP verarbeitet

1 SWS

No lecturers

Practice seminar

Submod: 0262bB1.1.2

Akt: 03.07.2023 09:16

Biodiversität und Evolution / Biodiversity and Evolution (S)

LV: 23779c

a.SAP verarbeitet

2 SWS

No lecturers

Seminar

Submod: 0262bB1.1.3

Akt: 03.07.2023 09:16

Practice seminar for Statistics II for Biosciences

LV: 60100102

a.SAP verarbeitet

2 SWS

Jochen Kruppa

Practice seminar

Submod: 0260cA2.6.2

Akt: 03.07.2023 09:16

Wed, 16:00 - 18:00 (T9/055 Seminarraum)

Tue, 16:00 - 18:00 (T9/046 Seminarraum)

Fri, 14:00 - 16:00 (T9/053 Seminarraum)

Tue, 10:00 - 12:00 (A3/SR 119)

Additional appointments

Appointment series

T9/055 Seminarraum

Jochen Kruppa

einmal, ab 10.04.2019, 16:00 - 18:00 (13 Termine)

T9/046 Seminarraum

Jochen Kruppa

einmal, ab 09.04.2019, 16:00 - 18:00 (14 Termine)

T9/053 Seminarraum

Jochen Kruppa

einmal, ab 12.04.2019, 14:00 - 16:00 (13 Termine)

A3/SR 119

Jochen Kruppa

einmal, ab 09.04.2019, 10:00 - 12:00 (14 Termine)

Medical Physiology

LV: 60100201

a.SAP verarbeitet

2 SWS

No lecturers

Lecture

Submod: 0260cA3.7.1

Akt: 05.04.2019 12:00

Seminar for Medical Physiology

LV: 60100211

a.SAP verarbeitet

2 SWS

No lecturers

Seminar

Submod: 0260cA3.7.2

Akt: 20.03.2019 12:00

Internship for Medical Physiology

LV: 60100230

a.SAP verarbeitet

2 SWS

No lecturers

Internship

Submod: 0260cA3.7.3

Akt: 20.03.2019 12:00

Seminar for Software Project Management (Preißner)

LV: 60100311

a.SAP verarbeitet

1 SWS

No lecturers

Seminar

Submod: 0261bA1.1.2

Akt: 11.03.2019 12:00

Software Project Management (Preißner)

LV: 60100313

a.SAP verarbeitet

4 SWS

No lecturers

Lab Seminar

Submod: 0261bA1.1.1

Akt: 11.03.2019 12:00

Physiology

LV: 60100401

a.SAP verarbeitet

2 SWS

No lecturers

Lecture

Submod: 0262bB1.4.1

Akt: 03.07.2023 09:16

Practice seminar for Physiology

LV: 60100402

a.SAP verarbeitet

2 SWS

No lecturers

Practice seminar

Submod: 0262bB1.4.2

Akt: 03.07.2023 09:16

Seminar for Physiology

LV: 60100411

a.SAP verarbeitet

2 SWS

No lecturers

Seminar

Submod: 0262bB1.4.3

Akt: 03.07.2023 09:16

Structural Bioinformatics

LV: 60100501

a.SAP verarbeitet

2 SWS

No lecturers

Lecture

Submod: 0262bB1.6.1

Akt: 03.07.2023 09:16

Description

Course overview:

This course will take place in the semester break (Sept - Oct. 2019), 8 days during 2 weeks, daily 10 am - 5 pm

Structure of the course:

Topics for lectures are:

1. Introductory session
2. Peptide design
3. Homology modeling
4. 3D Molecular superimposition of small molecules
5. In silico screening, molecular fingerprints and chemical similarity
6. Molecular docking
7. Natural products and fragments based drug discovery
8. In silico toxicity prediction

For further information see: http://bioinf-apache.charite.de/main/course_theoretical.php

Additional information

This course will take place in the semester break.

Additional appointments

Appointment series

Practice seminar for Structural Bioinformatics

LV: 60100502

a.SAP verarbeitet

2 SWS

No lecturers

Practice seminar

Submod: 0262bB1.6.2

Akt: 03.07.2023 09:16

Seminar for Structural Bioinformatics

LV: 60100511

a.SAP verarbeitet

2 SWS

No lecturers

Seminar

Submod: 0262bB1.6.3

Akt: 03.07.2023 09:16

Current Issues in Cell Physiology

LV: 60100613

a.SAP verarbeitet

4 SWS

No lecturers

Lab Seminar

Submod: 0262bB2.1.1

Akt: 03.07.2023 09:16

Description

Block course during the semester break in summer 2019 (two weeks all day).

The exact date will be determined by doodle.

Location: Charité Campus Benjamin Franklin (Steglitz, Hindenburgdamm 30), Institut für Klinische Physiologie

For further information: http://klinphys.charite.de/bioinfo/

or mail to Dorothee Günzel

These cells will be analyzed in the confocal laser scanning microscope and by other techniques. The results will be evaluated and interpreted in the context of the original hypitheses.

The experimental part will be flanked by seminars introducing the theoretical background and the various techniques.

The exact program of this course depends on the actual research of the institute and is tightly connected to our actual projects.

References

Additional information

Please bring lab coat, if available!

Additional appointments

Appointment series

Current Issues in Medical Genomics

LV: 60100713

a.SAP verarbeitet

4 SWS

Rosario Piro

Lab Seminar

Bachelor's programme in Bioinformatics

Bachelor's programme in Bioinformatics (2010 study regulations) (0260b_k150)

Module: Computerorientierte Mathematik II (0260bA2.4)

Inhalt:

Module: Fundamentals of Theoretical Computer Science (0086bA3.1)

Contents:

Module: Database Systems (0086bA3.3)

Content

Requirements

Bachelor's programme in Bioinformatics (2012 study regulations) (0260c_k150)

Module: Computer Science B (0260cA1.2)

Contents

Target Audience

Module: Mathematik für Bioinformatiker II (0260cA2.2)

Contents:

Target group:

Requirements:

Module: Computerorientierte Mathematik II (0260cA2.4)

Inhalt:

Module: Statistics for Biosciences II (0260cA2.6)

Module: Molecular Biology and Biochemistry I (0260cA3.3)

Module: Molecular Biology and Biochemistry III (0260cA3.5)

Module: Medizinische Physiologie (0260cA3.7)

Weitere Informationen und Veranstaltungszeiten:

Weitere Informationen und Veranstaltungszeiten:

Module: Database Systems (0260cA4.1)

Content

Requirements

Module: Fundamentals of Theoretical Computer Science (0260cA4.2)

Contents:

Master's programme in Bioinformatics

Master Bioinformatik (StO/PO 2012) (0262b_MA120)

Module: Research Lab (0262bA1.6)

Module: Biodiversität und Evolution (0262bB1.1)

Module: Netzwerkanalyse (0262bB1.3)

Literatur

Module: Physiologie (0262bB1.4)

Module: Sequenzanalyse (0262bB1.5)

Module: Strukturelle Bioinformatik (0262bB1.6)

Course overview:

Structure of the course:

Topics for lectures are:

Module: Current Issues in Cell Physiology (0262bB2.1)

Module: Angewandte Sequenzanalyse (0262bB2.2)

Goals:

Goals:

Content:

Prerequisites:

Module: Current Issues in Medical Genomics (0262bB2.6)

Goals:

Content:

Prerequisites:

Module: Forschungsmodul A (0262bB3.1)

Contents:

Content:

Open for:

Module: Forschungsmodul B (0262bB3.2)

Contents:

Content:

Open for:

General Professional Skills

ABV Bioinformatik (0261a_m30)

Module: Legal Aspects of Computer Science (0159cA2.4)

Content

Overview of the topics

Module: Planning, Implementing and Analysing a Tutorial in Computer Science (0159cA2.5)

Content

Module: System Administration (0159cA2.7)

Contents

Module: Berufspraktikum (0261aA2.1)

Module: Principles of Business Administration (0105cA4.1)

Module: Principles of Marketing (0105cA4.2)

Module: E-Business (0105cA4.3)

Module: Principles of Business Administration (0105dA4.1)

Module: Principles of Marketing (0105dA4.2)

Module: E-Business (0105dA4.3)

ABV Bioinformatik (für Studierende, die nach der BSc STO/PO 2012 studieren) (0261b_m30)

Module: Principles of Business Administration (0105dA4.1)

Module: Principles of Marketing (0105dA4.2)

Module: E-Business (0105dA4.3)