Courses by Study Regulations

Wintersemester 2024/25

19400432: Bioinformatics Research Internship

0.0 SWS

Tentative

E Dorothee Günzel

E Robert Preissner

E Frank Noe

E Bernhard Renard

E Tim Conrad

E Priyanka Banerjee

E Max von Kleist

E Martin Vingron

E Irmtraud Meyer

E Knut Reinert

E Katharina Jahn

E Camila Mazzoni

E Jana Wolf

Research Internship

60101113: Current questions of structural Bioinformatics

4.0 SWS

Tentative

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

The practical course gives the student a chance to test his or her understanding of the material taught in the theory course. A short introduction on each topic will be given on this course for individual topics. The students will be assigned to a small project/task which they have to perform. The students will be assigned into groups of two/three/max four members, depending on the total number of students registered for the course.

Website: https://bioinformatics.charite.de/main/course_practical.php

Structure of the course:

Everyday students will be assigned projects in groups for each topic. They work together to solve some interesting scientific problem. Each group will be closely supervised by the respective tutors. At the end of the lecture series, students (individual group) will be assigned one of the topic of the course, which they have to present in front of the wider audience. This will provide students, a way to practice presentation skills and can help them to develop the expertise needed to discuss their research in a clear and meaningful way.

Learning how to answer specific questions and present data to a range of individuals, will help students in other endeavors, including future conference presentations, masters or dissertation defenses.

Topic for practical lectures are:

Introductory session
Homology modeling
3D molecular superimposition of small molecules
In silico screening, molecular fingerprints and chemical similarity
Natural products and fragments based drug discovery
In silico toxicity prediction
Personalized medicine

Important: Material from the theory course will be intensively used in the practical course. It is advisable, that the students need to attend the theory course before participating in the practical course. Both the courses are interlinked.

60103201: Structural Bioinformatics Methods in Drug Development

2.0 SWS

Tentative

R E Robert Preissner

E Priyanka Banerjee

Lecture

60103202: Practice seminar for Structural Bioinformatics Methods in Drug Development

2.0 SWS

Tentative

R E Robert Preissner

E Priyanka Banerjee

Practice seminar

Sommersemester 2024

19400432: Bioinformatics Research Internship

0.0 SWS

Tentative

E Dorothee Günzel

E Robert Preissner

E Frank Noe

E Bernhard Renard

E Tim Conrad

E Priyanka Banerjee

E Max von Kleist

E Martin Vingron

E Irmtraud Meyer

E Knut Reinert

E Katharina Jahn

E Camila Mazzoni

Research Internship

Wintersemester 2023/24

19400432: Bioinformatics Research Internship

0.0 SWS

Tentative

E Dorothee Günzel

E Robert Preissner

E Heike Siebert

E Frank Noe

E Bernhard Renard

E Tim Conrad

E Priyanka Banerjee

E Max von Kleist

E Alexander Bockmayr

E Martin Vingron

E Irmtraud Meyer

E Knut Reinert

E Camila Mazzoni

Research Internship

60101113: Current questions of structural Bioinformatics

4.0 SWS

Published

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

Website: https://bioinformatics.charite.de/main/course_practical.php

Structure of the course:

Topic for practical lectures are:

Introductory session
Homology modeling
3D molecular superimposition of small molecules
In silico screening, molecular fingerprints and chemical similarity
Natural products and fragments based drug discovery
In silico toxicity prediction
Personalized medicine

60103201: Structural Bioinformatics Methods in Drug Development

2.0 SWS

Published

R E Robert Preissner

E Priyanka Banerjee

Lecture

60103202: Practice seminar for Structural Bioinformatics Methods in Drug Development

2.0 SWS

Published

R E Robert Preissner

E Priyanka Banerjee

Practice seminar

Sommersemester 2023

19400432: Bioinformatics Research Internship

0.0 SWS

Tentative

E Dorothee Günzel

E Robert Preissner

E Heike Siebert

E Frank Noe

E Bernhard Renard

E Tim Conrad

E Priyanka Banerjee

E Max von Kleist

E Alexander Bockmayr

E Martin Vingron

E Irmtraud Meyer

E Knut Reinert

E Camila Mazzoni

Research Internship

Wintersemester 2022/23

19400432: Bioinformatics Research Internship

0.0 SWS

Tentative

E Dorothee Günzel

E Robert Preissner

E Heike Siebert

E Frank Noe

E Bernhard Renard

E Tim Conrad

E Priyanka Banerjee

E Max von Kleist

E Alexander Bockmayr

E Martin Vingron

E Irmtraud Meyer

E Knut Reinert

E Camila Mazzoni

Research Internship

60101113: Current questions of structural Bioinformatics

4.0 SWS

Edited

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

Website: https://bioinformatics.charite.de/main/course_practical.php

Structure of the course:

Topic for practical lectures are:

Introductory session
Homology modeling
3D molecular superimposition of small molecules
In silico screening, molecular fingerprints and chemical similarity
Natural products and fragments based drug discovery
In silico toxicity prediction
Personalized medicine

60103201: Structural Bioinformatics Methods in Drug Development

2.0 SWS

Edited

R E Robert Preissner

E Priyanka Banerjee

Lecture

60103202: Practice seminar for Structural Bioinformatics Methods in Drug Development

2.0 SWS

Edited

R E Robert Preissner

E Priyanka Banerjee

Practice seminar

Sommersemester 2022

19400432: Bioinformatics Research Internship

0.0 SWS

Tentative

E Dorothee Günzel

E Robert Preissner

E Heike Siebert

E Frank Noe

E Bernhard Renard

E Tim Conrad

E Priyanka Banerjee

E Alexander Bockmayr

E Martin Vingron

E Irmtraud Meyer

E Knut Reinert

E Camila Mazzoni

Research Internship

Wintersemester 2021/22

19400432: Bioinformatics Research Internship

0.0 SWS

Tentative

E Alexander Bockmayr

E Martin Vingron

E Dorothee Günzel

E Irmtraud Meyer

E Knut Reinert

E Robert Preissner

E Heike Siebert

E Frank Noe

E Camila Mazzoni

E Tim Conrad

E Priyanka Banerjee

Research Internship

60101113: Current questions of structural Bioinformatics

4.0 SWS

Edited

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

Website: https://bioinformatics.charite.de/main/course_practical.php

Structure of the course:

Topic for practical lectures are:

Introductory session
Homology modeling
3D molecular superimposition of small molecules
In silico screening, molecular fingerprints and chemical similarity
Natural products and fragments based drug discovery
In silico toxicity prediction
Personalized medicine

60103201: Structural Bioinformatics Methods in Drug Development

2.0 SWS

Tentative

R Robert Preissner

E Priyanka Banerjee

Lecture

60103202: Practice seminar for Structural Bioinformatics Methods in Drug Development

2.0 SWS

Tentative

R Robert Preissner

E Priyanka Banerjee

Practice seminar

Sommersemester 2021

19400432: Bioinformatics Research Internship

0.0 SWS

In CM

E Dorothee Günzel

E Robert Preissner

E Heike Siebert

E Frank Noe

E Bernhard Renard

E Tim Conrad

E Priyanka Banerjee

E Alexander Bockmayr

E Martin Vingron

E Irmtraud Meyer

E Knut Reinert

E Camila Mazzoni

Research Internship

60100311: Seminar zu Projektmanagement im Softwarebereich (Preißner)

1.0 SWS

Edited

R E Robert Preissner

E Priyanka Banerjee

Seminar

60100313: Projektmanagement im Softwarebereich (Preißner)

4.0 SWS

Edited

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

60100501: Structural Bioinformatcs

2.0 SWS

Cancelled

E Robert Preissner

E Priyanka Banerjee

Lecture

Course overview:

This course will take place in the semester break (24.09 - 5.10.2018), 8 days during 2 weeks, daily 10 am - 5 pm

The Structural Bioinformatics Group offers a broad and comprehensive set of lectures in the areas of structural bioinformatics and drug design. The course begins with a general introduction of the drug design pipeline and an introductory course on the structural bioinformatics research field. These lead on to more specialized topics, amongst others in chemo-informatics, molecular docking, homology modeling and more detailed aspects of toxicity prediction models.

Structure of the course:

This course consists of eight lecture series. A detailed lecture for a period of 2 hrs on individual topics is delivered in the morning session. Afternoon session consists of an assignment for each topic. This part of the lecture course is assessed by examination, which will take place at the end of the course. Students are asked to delivered a seminar/presentation for 25 minutes, on the topic assigned to them. The material for the examination will be provided in advance, ensuring that the students have required time for preparation.

Topics for lectures are:

1. Introductory session
2. Peptide design
3. Homology modeling
4. 3D Molecular superimposition of small molecules
5. In silico screening, molecular fingerprints and chemical similarity
6. Molecular docking
7. Natural products and fragments based drug discovery
8. In silico toxicity prediction

For further information see: http://bioinf-apache.charite.de/main/course_theoretical.php

Additional information

Zweiwöchiger Blockkurs in den Semesterferien

60100502: Übung zu Strukturelle Bioinformatik

2.0 SWS

Cancelled

E Robert Preissner

E Priyanka Banerjee

Practice seminar

60100511: Seminar zu Strukturelle Bioinformatik

2.0 SWS

Cancelled

E Robert Preissner

E Priyanka Banerjee

Seminar

Wintersemester 2020/21

19400432: Bioinformatics Research Internship

0.0 SWS

Tentative

E Dorothee Günzel

E Robert Preissner

E Heike Siebert

E Frank Noe

E Bernhard Renard

E Tim Conrad

E Priyanka Banerjee

E Alexander Bockmayr

E Martin Vingron

E Irmtraud Meyer

E Knut Reinert

E Camila Mazzoni

Research Internship

60101113: Current questions of structural Bioinformatics

4.0 SWS

Edited

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

Welcome to the practical course, please look into the link for the theory module for the basic idea about the course.

Structure of the course:

Topic for practical lectures are:

Introductory session
Homology modeling
3D molecular superimposition of small molecules
In silico screening, molecular fingerprints and chemical similarity
Natural products and fragments based drug discovery
In silico toxicity prediction
Personalized medicine

Website: http://bioinf-apache.charite.de/main/course_practical.php

Additional information

Blockveranstaltung: 03.04.2017 - 12.04.2017 (10:00 Uhr - 17:00 Uhr)

Vorbesprechung:

Datum: xx.xx.2017
Zeit: 11.00 am
Ort: Campus Mitte, Philippstr. 12, 10115 Berlin

Sommersemester 2020

19400432: Bioinformatics Research Internship

0.0 SWS

Tentative

E Rosario Piro

E Dorothee Günzel

E Robert Preissner

E Heike Siebert

E Frank Noe

E Bernhard Renard

E Tim Conrad

E Priyanka Banerjee

E Alexander Bockmayr

E Martin Vingron

E Irmtraud Meyer

E Knut Reinert

E Camila Mazzoni

Research Internship

60100311: Seminar zu Projektmanagement im Softwarebereich (Preißner)

1.0 SWS

Tentative

R E Robert Preissner

E Priyanka Banerjee

Seminar

60100313: Projektmanagement im Softwarebereich (Preißner)

4.0 SWS

Tentative

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

60100501: Structural Bioinformatcs

2.0 SWS

Tentative

E Robert Preissner

R Priyanka Banerjee

Lecture

Course overview:

This course will take place in the semester break, 8 days during 2 weeks, daily 10 am - 5 pm

Structure of the course:

Topics for lectures are:

1. Introductory session
2. Peptide design
3. Homology modeling
4. 3D Molecular superimposition of small molecules
5. In silico screening, molecular fingerprints and chemical similarity
6. Molecular docking
7. Natural products and fragments based drug discovery
8. In silico toxicity prediction

For further information see: http://bioinf-apache.charite.de/main/course_theoretical.php

Additional information

Zweiwöchiger Blockkurs in den Semesterferien

60100502: Übung zu Strukturelle Bioinformatik

2.0 SWS

Tentative

E Robert Preissner

R Priyanka Banerjee

Practice seminar

60100511: Seminar zu Strukturelle Bioinformatik

2.0 SWS

Tentative

E Robert Preissner

R Priyanka Banerjee

Seminar

Wintersemester 2019/20

19400432: Bioinformatics Research Internship

0.0 SWS

Published

E Rosario Piro

E Dorothee Günzel

E Robert Preissner

E Heike Siebert

E Frank Noe

E Bernhard Renard

E Tim Conrad

E Priyanka Banerjee

E Alexander Bockmayr

E Martin Vingron

E Irmtraud Meyer

E Knut Reinert

E Camila Mazzoni

Research Internship

60101113: Current questions of structural Bioinformatics

4.0 SWS

Edited

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

Welcome to the practical course, please look into the link for the theory module for the basic idea about the course.

Structure of the course:

Topic for practical lectures are:

Introductory session
Homology modeling
3D molecular superimposition of small molecules
In silico screening, molecular fingerprints and chemical similarity
Natural products and fragments based drug discovery
In silico toxicity prediction
Personalized medicine

Website: http://bioinf-apache.charite.de/main/course_practical.php

Additional information

Blockveranstaltung (8 Tage) in der vorlesungsfreien Zeit nach dem Wintersemester (10:00 Uhr - 17:00 Uhr).

Sommersemester 2019

60100311: Seminar zu Projektmanagement im Softwarebereich (Preißner)

1.0 SWS

Tentative

R E Robert Preissner

E Priyanka Banerjee

Seminar

60100313: Projektmanagement im Softwarebereich (Preißner)

4.0 SWS

Tentative

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

60100501: Structural Bioinformatics

2.0 SWS

Tentative

E Robert Preissner

E Priyanka Banerjee

Lecture

Course overview:

This course will take place in the semester break (Sept - Oct. 2019), 8 days during 2 weeks, daily 10 am - 5 pm

Structure of the course:

Topics for lectures are:

1. Introductory session
2. Peptide design
3. Homology modeling
4. 3D Molecular superimposition of small molecules
5. In silico screening, molecular fingerprints and chemical similarity
6. Molecular docking
7. Natural products and fragments based drug discovery
8. In silico toxicity prediction

For further information see: http://bioinf-apache.charite.de/main/course_theoretical.php

Additional information

Zweiwöchiger Blockkurs in den Semesterferien

60100502: Übung zu Strukturelle Bioinformatik

2.0 SWS

Tentative

E Robert Preissner

E Priyanka Banerjee

Practice seminar

60100511: Seminar zu Strukturelle Bioinformatik

2.0 SWS

Tentative

E Robert Preissner

E Priyanka Banerjee

Seminar

Wintersemester 2018/19

60101113: Current questions of structural Bioinformatics

4.0 SWS

Tentative

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

Welcome to the practical course, please look into the link for the theory module for the basic idea about the course.

Structure of the course:

Topic for practical lectures are:

Introductory session
Homology modeling
3D molecular superimposition of small molecules
In silico screening, molecular fingerprints and chemical similarity
Natural products and fragments based drug discovery
In silico toxicity prediction
Personalized medicine

Website: http://bioinf-apache.charite.de/main/course_practical.php

Additional information

Blockveranstaltung: 03.04.2017 - 12.04.2017 (10:00 Uhr - 17:00 Uhr)

Vorbesprechung:

Datum: xx.xx.2017
Zeit: 11.00 am
Ort: Campus Mitte, Philippstr. 12, 10115 Berlin

Sommersemester 2018

19400432: Research internship

0.0 SWS

Tentative

E Rosario Piro

E Dorothee Günzel

E Susanna Röblitz

E Robert Preissner

E Heike Siebert

E Frank Noe

E Bernhard Renard

E Tim Conrad

E Priyanka Banerjee

E Alexander Bockmayr

E Annalisa Marsico

E Martin Vingron

E Knut Reinert

E Andrea Volkamer

E Camila Mazzoni

Research Internship

60100311: Seminar zu Projektmanagement im Softwarebereich (Preißner)

1.0 SWS

Tentative

R E Robert Preissner

E Priyanka Banerjee

Seminar

60100313: Projektmanagement im Softwarebereich (Preißner)

4.0 SWS

Tentative

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

60100501: Structural Bioinformatcs

2.0 SWS

Tentative

E Robert Preissner

R E Priyanka Banerjee

Lecture

Course overview:

This course will take place in the semester break (24.09 - 5.10.2018), 8 days during 2 weeks, daily 10 am - 5 pm

Structure of the course:

Topics for lectures are:

1. Introductory session
2. Peptide design
3. Homology modeling
4. 3D Molecular superimposition of small molecules
5. In silico screening, molecular fingerprints and chemical similarity
6. Molecular docking
7. Natural products and fragments based drug discovery
8. In silico toxicity prediction

For further information see: http://bioinf-apache.charite.de/main/course_theoretical.php

Additional information

Zweiwöchiger Blockkurs in den Semesterferien

60100502: Übung zu Strukturelle Bioinformatik

2.0 SWS

Tentative

E Robert Preissner

R E Priyanka Banerjee

Practice seminar

60100511: Seminar zu Strukturelle Bioinformatik

2.0 SWS

Tentative

E Robert Preissner

R E Priyanka Banerjee

Seminar

Wintersemester 2017/18

60101113: Current questions of structural Bioinformatics

4.0 SWS

Tentative

R E Robert Preissner

E Priyanka Banerjee

Lab Seminar

Welcome to the practical course, please look into the link for the theory module for the basic idea about the course.

Structure of the course:

Topic for practical lectures are:

Introductory session
Homology modeling
Peptide design
3D Molecular superimposition of small molecules
Comparison and application of structural fingerprints
Molecular docking
Natural products and fragments based drug discovery
In silico toxicity prediction

Website: https://bioinformatics.charite.de/main/content/practical_theoretical.php

The preliminary meeting will take place on 12.03.2018. Time ar 11.00 a.m

Venue: Charite Campus Mitte, Phillippstrasse 12, 10115 Berlin, anatomy building (Waldeyer Haus)

Seminar room: 03 001 (3rd Floor)

Additional information

Blockveranstaltung: 03.04.2017 - 12.04.2017 (10:00 Uhr - 17:00 Uhr)

Vorbesprechung:

Datum: xx.xx.2017
Zeit: 11.00 am
Ort: Campus Mitte, Philippstr. 12, 10115 Berlin

Sommersemester 2017

60100311: Seminar zu Projektmanagement im Softwarebereich (Preißner)

1.0 SWS

Tentative

E Robert Preissner

E Priyanka Banerjee

Seminar

60100313: Projektmanagement im Softwarebereich (Preißner)

4.0 SWS

Tentative

E Robert Preissner

E Priyanka Banerjee

Lab Seminar

60100501: Strukturelle Bioinformatik

2.0 SWS

Tentative

E Robert Preissner

E Priyanka Banerjee

Lecture

Course overview:

Structure of the course:

Topics for lectures are:

1. Introductory session
2. Peptide design
3. Homology modeling
4. 3D Molecular superimposition of small molecules
5. In silico screening, molecular fingerprints and chemical similarity
6. Molecular docking
7. Natural products and fragments based drug discovery
8. In silico toxicity prediction

For further information see: http://bioinf-apache.charite.de/main/content/practical_theoretical.php

Additional information

Zweiwöchige Blockveranstaltung im September 2017

60100502: Übung zu Strukturelle Bioinformatik

2.0 SWS

Tentative

E Robert Preissner

E Priyanka Banerjee

Practice seminar

60100511: Seminar zu Strukturelle Bioinformatik

2.0 SWS

Tentative

E Robert Preissner

E Priyanka Banerjee

Seminar

Wintersemester 2016/17

60101113: Current questions of structural bioinformatics

4.0 SWS

Tentative

E Robert Preissner

E Priyanka Banerjee

Lab Seminar

Current questions of structural Bioinformatics

Welcome to the practical course, please look into the link for the theory module for the basic idea about the course.

Structure of the course:

Topic for practical lectures are:

Introductory session
Homology modeling
Peptide design
3D Molecular superimposition of small molecules
Comparison and application of structural fingerprints
Molecular docking
Natural products and fragments based drug discovery
In silico toxicity prediction

Website: http://bioinf-apache.charite.de/main/content/practical_theoretical.php

Additional information

Blockveranstaltung: 03.04.2017 - 12.04.2017 (10:00 Uhr - 17:00 Uhr)

Vorbesprechung:

Datum: xx.xx.2017
Zeit: 11.00 am
Ort: Campus Mitte, Philippstr. 12, 10115 Berlin